General information
PDB ID 2J37
Title MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS
PDB header RIBOSOME
Date 2006-08-18
Experimental method ELECTRON MICROSCOPY
Resolution (A) 8
Kind rna
Organism TRITICUM SP., CANIS SP., HOMO SAPIENS, HALOARCULA MARISMORTUI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2j37.pdb 456BSW AZ 0
Biounits:
2j37.pdb1.pdb 456BSW AZ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SRP54 Domain P61010_102-296 1.2e-77 1 CL0023 W 99 296   
SRP_SPB Domain P61010_326-431 4.3e-31 1 CL0123 W 326 431 AZ   
SRP54_N Domain P61010_8-83 9.7e-19 1 No_clan W 8 83   
Ribosomal_L23 Family O81229_28-101 1e-14 1 No_clan 4 71 144 Z   
Ribosomal_L29 Family Q8L805_9-65 4e-20 1 CL0346 5 9 65   
Ribosomal_L31e Family Q5XLD9_18-96 3.9e-41 1 No_clan 6 17 95 Z   
SRP19 Family P09132_17-115 2.2e-29 1 CL0123 B 17 115 A   
DUF2209 Family P61010_179-248 0.00026 0 No_clan W 187 256   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: SRP19
    Superfamily: SRP19
      Family: SRP19
SRP19 B 14 118 A -
GO terms
Protein chains: GO type: GO description:
5=1-124 C cytosolic large ribosomal subunit
5=1-124 F mRNA binding
5=1-124 F structural constituent of ribosome
5=1-124 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
5=1-124 P translation
B=14-120 C cytosol
B=14-120 C nucleolus
B=14-120 C signal recognition particle
B=14-120 C signal recognition particle, endoplasmic reticulum targeting
B=14-120 F 7S RNA binding
B=14-120 F RNA binding
B=14-120 P cotranslational protein targeting to membrane
B=14-120 P response to drug
B=14-120 P SRP-dependent cotranslational protein targeting to membrane
B=14-120 P SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
W=1-504 C cytosol
W=1-504 C endoplasmic reticulum
W=1-504 C nuclear speck
W=1-504 C nucleus
W=1-504 C signal recognition particle, endoplasmic reticulum targeting
W=1-504 F 7S RNA binding
W=1-504 F drug binding
W=1-504 F endoplasmic reticulum signal peptide binding
W=1-504 F GDP binding
W=1-504 F GTP binding
W=1-504 F GTPase activity
W=1-504 F ribonucleoprotein complex binding
W=1-504 P exocrine pancreas development
W=1-504 P granulocyte differentiation
W=1-504 P neutrophil chemotaxis
W=1-504 P protein targeting to ER
W=1-504 P response to drug
W=1-504 P SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
W=1-504 P SRP-dependent cotranslational protein targeting to membrane, translocation
Sequences
Download file with secondary structure created by Stride  
2j37.pdb1.pdb:   [ download sequences in FASTA format ]
4 (protein): 
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5 (protein): 
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6 (protein): 
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B (protein): 
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S (protein): 
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W (protein): 
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A (rna): 
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Z (rna): 
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