General information
PDB ID 2KMK
Title GFI-1 ZINC FINGERS 3-5 COMPLEXED WITH DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2009-07-30
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism RATTUS NORVEGICUS
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2kmk.pdb A BC 12
NMR models:
2kmk.MDL1.pdb A BC 1
2kmk.MDL2.pdb A BC 1
2kmk.MDL3.pdb A BC 1
2kmk.MDL4.pdb A BC 1
2kmk.MDL5.pdb A BC 1
2kmk.MDL6.pdb A BC 1
2kmk.MDL7.pdb A BC 1
2kmk.MDL8.pdb A BC 1
2kmk.MDL9.pdb A BC 1
2kmk.MDL10.pdb A BC 1
2kmk.MDL11.pdb A BC 1
2kmk.MDL12.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain Q07120_357-380 1.4e-07 0 CL0361 A 44 69 B  H-Bb 
zf-C2H2 Domain Q07120_313-335 9.7e-07 1 CL0361 A 2 24 BC  H-Bb H-Mj S-Bb S-Mj L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=312-393 C nuclear body
A=312-393 C nuclear matrix
A=312-393 C nucleoplasm
A=312-393 C nucleus
A=312-393 C transcription repressor complex
A=312-393 F DNA-binding transcription factor activity
A=312-393 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A=312-393 F metal ion binding
A=312-393 F transcription regulatory region sequence-specific DNA binding
A=312-393 P cell fate commitment
A=312-393 P cellular response to lipopolysaccharide
A=312-393 P hemopoiesis
A=312-393 P inner ear auditory receptor cell differentiation
A=312-393 P inner ear morphogenesis
A=312-393 P mechanosensory behavior
A=312-393 P negative regulation of calcidiol 1-monooxygenase activity
A=312-393 P negative regulation of cell fate specification
A=312-393 P negative regulation of neuron projection development
A=312-393 P negative regulation of NF-kappaB transcription factor activity
A=312-393 P negative regulation of transcription by RNA polymerase II
A=312-393 P negative regulation of transcription, DNA-templated
A=312-393 P positive regulation of cell fate specification
A=312-393 P positive regulation of interleukin-6-mediated signaling pathway
A=312-393 P positive regulation of transcription by RNA polymerase II
A=312-393 P regulation of histone H3-K4 methylation
A=312-393 P regulation of toll-like receptor signaling pathway
Sequences
Download file with secondary structure created by Stride  
2kmk.MDL1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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