General information
PDB ID 2NL8
Title THE ORIGIN BINDING DOMAIN OF THE SV40 LARGE T ANTIGEN BOUND NON SPECIFICALLY TO A 17 BP PALINDROME DNA (SITES 1 AND 3)
PDB header DNA BINDING PROTEIN/DNA
Date 2006-10-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind dna
Organism SIMIAN VIRUS 40
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2nl8.pdb A W 0
Biounits:
2nl8.pdb1.pdb A W 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
T_Ag_DNA_bind Domain Q98ZP7_136-229 3.2e-37 1 CL0169 A 136 229 W   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=131-259 C host cell nucleus
A=131-259 F ATP binding
A=131-259 F DNA replication origin binding
A=131-259 F double-stranded DNA binding
A=131-259 F helicase activity
A=131-259 F identical protein binding
A=131-259 F metal ion binding
A=131-259 F single-stranded DNA binding
A=131-259 P bidirectional double-stranded viral DNA replication
A=131-259 P DNA unwinding involved in DNA replication
A=131-259 P modulation by virus of host G1/S transition checkpoint
A=131-259 P modulation by virus of host ubiquitin-protein ligase activity
A=131-259 P suppression by virus of host JAK1 activity
A=131-259 P suppression by virus of host type I interferon-mediated signaling pathway
A=131-259 P viral DNA genome replication
Sequences
Download file with secondary structure created by Stride  
2nl8.pdb1.pdb:   [ download sequences in FASTA format ]
W (dna): 
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A (protein): 
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