General information
PDB ID 2OM7
Title STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS
PDB header RIBOSOME
Date 2007-01-21
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.3
Kind rna
Organism THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2om7.pdb EKLN ABCDFGHIJM 0
Biounits:
2om7.pdb1.pdb EKLN ABCDFGHIJM 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L1 Domain Q5SLP7_35-221 5e-40 1 No_clan K 22 220 JM   
EFG_IV Domain Q5SHN5_479-598 1.9e-52 1 CL0329 L 479 598   
GTP_EFTU Domain Q5SHN5_10-282 1.6e-40 1 CL0023 L 36 282 F   
EFG_III Domain Q5SHN5_404-478 2.8e-36 1 CL0437 L 404 478 F   
EFG_C Domain Q5SHN5_600-687 3e-33 1 CL0437 L 600 687 FI   
GTP_EFTU_D2 Domain Q5SHN5_323-390 1.8e-15 1 CL0575 L 323 390 BD   
Ribosom_S12_S23 Family Q5SHN3_12-123 2.8e-43 1 CL0021 E 15 126 C   
Ribosomal_S2 Family P80371_10-225 4.6e-90 1 CL0067 N 10 225   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Ribosome complexes
70S ribosome functional complex E 5 128 C -
Class: Multi-domain proteins (alpha and beta)
  Fold: Ribosomal protein L1
    Superfamily: Ribosomal protein L1
      Family: Ribosomal protein L1
Ribosomal protein L1 K 18 224 JM -
Class: Alpha and beta proteins (a/b)
  Fold: Flavodoxin-like
    Superfamily: Ribosomal protein S2
      Family: Ribosomal protein S2
Ribosomal protein S2 N 7 241 -
GO terms
Protein chains: GO type: GO description:
E=1-132 C small ribosomal subunit
E=1-132 F rRNA binding
E=1-132 F structural constituent of ribosome
E=1-132 F tRNA binding
E=1-132 P response to antibiotic
E=1-132 P translation
K=1-229 C large ribosomal subunit
K=1-229 F rRNA binding
K=1-229 F structural constituent of ribosome
K=1-229 F tRNA binding
K=1-229 P regulation of translation
K=1-229 P translation
L=1-691 C cytoplasm
L=1-691 F GDP binding
L=1-691 F GTP binding
L=1-691 F GTPase activity
L=1-691 F magnesium ion binding
L=1-691 F ribosome binding
L=1-691 F translation elongation factor activity
L=1-691 P translational elongation
N=1-256 C small ribosomal subunit
N=1-256 F rRNA binding
N=1-256 F structural constituent of ribosome
N=1-256 P translation
Sequences
Download file with secondary structure created by Stride  
2om7.pdb1.pdb:   [ download sequences in FASTA format ]
E (protein): 
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K (protein): 
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L (protein): 
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N (protein): 
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A (rna): 
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B (rna): 
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C (rna): 
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D (rna): 
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F (rna): 
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G (rna): 
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H (rna): 
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I (rna): 
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J (rna): 
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M (rna): 
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