General information
PDB ID 2R5Z
Title STRUCTURE OF SCR/EXD COMPLEX BOUND TO A DNA SEQUENCE DERIVED FROM THE FKH GENE
PDB header TRANSCRIPTION/DNA
Date 2007-09-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism DROSOPHILA MELANOGASTER
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2r5z.pdb AB CD 0
Biounits:
2r5z.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain P09077_327-381 5.9e-23 1 CL0123 A 90 158 CD  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain P40427_242-298 1.7e-19 1 CL0123 B 205 257 CD  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
Extradenticle (exd) homeodomain B 205 259 CD  H-Bb H-Mj L-Bb 
GO terms
Protein chains: GO type: GO description:
A=298-384 C nucleus
A=298-384 F activating transcription factor binding
A=298-384 F DNA-binding transcription activator activity, RNA polymerase II-specific
A=298-384 F protein homodimerization activity
A=298-384 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A=298-384 F sequence-specific DNA binding
A=298-384 P anterior/posterior pattern specification
A=298-384 P midgut development
A=298-384 P positive regulation of transcription by RNA polymerase II
A=298-384 P salivary gland boundary specification
A=298-384 P sex comb development
B=238-300 C cytoplasm
B=238-300 C nucleus
B=238-300 C protein-DNA complex
B=238-300 C RNA polymerase II transcription regulator complex
B=238-300 C transcription regulator complex
B=238-300 F activating transcription factor binding
B=238-300 F cis-regulatory region sequence-specific DNA binding
B=238-300 F DNA binding
B=238-300 F DNA-binding transcription factor activity
B=238-300 F DNA-binding transcription factor activity, RNA polymerase II-specific
B=238-300 F protein heterodimerization activity
B=238-300 F sequence-specific DNA binding
B=238-300 F transcription coactivator activity
B=238-300 F transcription coregulator activity
B=238-300 F transcription factor binding
B=238-300 P animal organ morphogenesis
B=238-300 P brain development
B=238-300 P embryonic organ development
B=238-300 P eye development
B=238-300 P neuron development
B=238-300 P oenocyte development
B=238-300 P peripheral nervous system development
B=238-300 P positive regulation of transcription by RNA polymerase II
B=238-300 P positive regulation of transcription, DNA-templated
B=238-300 P regulation of cell fate specification
B=238-300 P regulation of transcription by RNA polymerase II
B=238-300 P salivary gland boundary specification
B=238-300 P somatic muscle development
Sequences
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2r5z.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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