General information
PDB ID 2R8J
Title STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WITH 1,2- D(GPG)-CISPLATIN CONTAINING DNA
PDB header REPLICATION, TRANSFERASE/DNA
Date 2007-09-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.1
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2r8j.pdb AB QUPT 0
Biounits:
2r8j.pdb1.pdb A QU 1
2r8j.pdb2.pdb B PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IMS_C Domain Q04049_392-509 3.8e-06 1 No_clan A 392 508 QU  H-Bb S-Bb 
IMS_C Domain Q04049_392-509 3.7e-06 1 No_clan B 392 508 T  H-Bb S-Bb S-Mj 
IMS Family Q04049_29-276 5.4e-48 1 No_clan A 29 276 U  H-Bb 
IMS Family Q04049_29-276 5.3e-48 1 No_clan B 29 276 TP  H-Bb L-Bb 
IMS_HHH Motif Q04049_291-324 5.9e-05 0 CL0198 A 288 322 Q  H-Bb L-Bb 
IMS_HHH Motif Q04049_291-324 5.8e-05 0 CL0198 B 288 322 P  H-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DNA polymerase eta A 390 509 QU -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DNA polymerase eta A 1 389 QU -
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DNA polymerase eta B 390 509 T -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DNA polymerase eta B 1 389 PT -
GO terms
Protein chains: GO type: GO description:
A/B=1-531 C mitochondrion
A/B=1-531 C nucleus
A/B=1-531 C replication fork
A/B=1-531 C site of double-strand break
A/B=1-531 F damaged DNA binding
A/B=1-531 F DNA-directed DNA polymerase activity
A/B=1-531 F metal ion binding
A/B=1-531 P chromosome segregation
A/B=1-531 P DNA replication
A/B=1-531 P error-free translesion synthesis
A/B=1-531 P error-prone translesion synthesis
A/B=1-531 P mitotic sister chromatid cohesion
A/B=1-531 P response to radiation
Sequences
Download file with secondary structure created by Stride  
2r8j.pdb1.pdb:   [ download sequences in FASTA format ]
Q (dna): 
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U (dna): 
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A (protein): 
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2r8j.pdb2.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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B (protein): 
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