General information
PDB ID 2RGR
Title TOPOISOMERASE IIA BOUND TO G-SEGMENT DNA
PDB header ISOMERASE/DNA
Date 2007-10-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2rgr.pdb A CD 0
Biounits:
2rgr.pdb1.pdb A CD 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_topoisoIV Family P06786_690-1160 6.1e-127 1 No_clan A 690 1160 CD  S-Bb S-Mj S-Mn L-Bb 
TOPRIM_C Family P06786_559-688 1.1e-48 1 No_clan A 559 688 D  H-Bb H-Mn 
Toprim Family P06786_444-559 2.7e-07 1 CL0413 A 444 559 CD  H-Bb S-Bb L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Multi-domain proteins (alpha and beta)
  Fold: Type II DNA topoisomerase
    Superfamily: Type II DNA topoisomerase
      Family: Type II DNA topoisomerase
DNA topoisomerase II, C-terminal fragment (residues 410-1202) A 419 1177 CD -
GO terms
Protein chains: GO type: GO description:
A=419-1177 C DNA replication termination region
A=419-1177 C mitochondrion
A=419-1177 C nucleus
A=419-1177 C synaptonemal complex
A=419-1177 F ATP binding
A=419-1177 F DNA binding
A=419-1177 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A=419-1177 F identical protein binding
A=419-1177 F metal ion binding
A=419-1177 P chromatin assembly or disassembly
A=419-1177 P chromatin remodeling at centromere
A=419-1177 P DNA strand elongation involved in DNA replication
A=419-1177 P DNA topological change
A=419-1177 P gene looping
A=419-1177 P mitotic DNA integrity checkpoint
A=419-1177 P reciprocal meiotic recombination
A=419-1177 P regulation of mitotic recombination
A=419-1177 P replication fork progression beyond termination site
A=419-1177 P resolution of meiotic recombination intermediates
A=419-1177 P rRNA transcription
A=419-1177 P sister chromatid segregation
Sequences
Download file with secondary structure created by Stride  
2rgr.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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