General information
PDB ID 2VNU
Title CRYSTAL STRUCTURE OF SC RRP44
PDB header HYDROLASE/RNA
Date 2008-02-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2vnu.pdb D B 0
Biounits:
2vnu.pdb1.pdb D B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNB Domain Q08162_531-863 7e-77 1 No_clan D 531 863 B   
Rrp44_CSD1 Domain Q08162_252-399 2.3e-56 1 CL0021 D 252 387 B   
Rrp44_S1 Domain Q08162_912-998 2.3e-27 1 CL0021 D 912 998   
OB_Dis3 Domain Q08162_421-489 1.2e-15 1 CL0021 D 420 489   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Exosome complex exonuclease RRP44 D 400 494 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Exosome complex exonuclease RRP44 D 911 998 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Exosome complex exonuclease RRP44 D 252 399 B -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: RNB domain-like
Exosome complex exonuclease RRP44 D 495 910 B -
GO terms
Protein chains: GO type: GO description:
D=242-1001 C cytoplasmic exosome (RNase complex)
D=242-1001 C exosome (RNase complex)
D=242-1001 C mitochondrion
D=242-1001 C nuclear exosome (RNase complex)
D=242-1001 C nucleolus
D=242-1001 C nucleus
D=242-1001 F 3'-5'-exoribonuclease activity
D=242-1001 F endonuclease activity
D=242-1001 F endoribonuclease activity
D=242-1001 F tRNA binding
D=242-1001 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
D=242-1001 P mRNA processing
D=242-1001 P ncRNA 3'-end processing
D=242-1001 P nonfunctional rRNA decay
D=242-1001 P nuclear mRNA surveillance
D=242-1001 P nuclear polyadenylation-dependent CUT catabolic process
D=242-1001 P nuclear polyadenylation-dependent mRNA catabolic process
D=242-1001 P nuclear polyadenylation-dependent rRNA catabolic process
D=242-1001 P nuclear polyadenylation-dependent tRNA catabolic process
D=242-1001 P nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
D=242-1001 P nuclear-transcribed mRNA catabolic process, non-stop decay
D=242-1001 P polyadenylation-dependent snoRNA 3'-end processing
D=242-1001 P rRNA catabolic process
Sequences
Download file with secondary structure created by Stride  
2vnu.pdb1.pdb:   [ download sequences in FASTA format ]
D (protein): 
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B (rna): 
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