General information
PDB ID 3D6Y
Title CRYSTAL STRUCTURE OF R275E MUTANT OF BMRR BOUND TO DNA AND BERBERINE
PDB header TRANSCRIPTION REGULATOR/DNA
Date 2008-05-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism BACILLUS SUBTILIS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3d6y.pdb A B 0
Biounits:
3d6y.pdb1.pdb A B 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GyrI-like Domain P39075_122-277 4.3e-10 1 CL0319 A 122 277   
MerR_1 Family P39075_5-71 9.9e-14 1 CL0123 A 6 75 B   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Putative DNA-binding domain
    Superfamily: Putative DNA-binding domain
      Family: DNA-binding N-terminal domain of transcription activators
Transcription activator BmrR A 3 120 B  H-Bb H-Mj L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: Probable bacterial effector-binding domain
    Superfamily: Probable bacterial effector-binding domain
      Family: Multidrug-binding domain of transcription activator BmrR
Multidrug-binding domain of transcription activator BmrR A 121 277 -
GO terms
Protein chains: GO type: GO description:
A=1-278 F DNA binding
A=1-278 P regulation of transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
3d6y.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text