General information
PDB ID 3JCA
Title CORE MODEL OF THE MOUSE MAMMARY TUMOR VIRUS INTASOME
PDB header VIRAL PROTEIN
Date 2015-11-24
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.8
Kind dna
Organism MOUSE MAMMARY TUMOR VIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3jca.pdb ABCDEFGH IJKL 0
Biounits:
3jca.pdb1.pdb ABCDEFGH IJKL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IN_DBD_C Domain P03365_1655-1700 1.2e-22 1 CL0010 A 219 264 JKI  H-Bb S-Bb L-Mj 
rve Domain P03365_1492-1587 1.5e-22 1 CL0219 A 56 151 IJ  L-Bb 
Integrase_Zn Domain P03365_1441-1477 1.2e-17 1 No_clan A 5 45 KL  H-Bb H-Mj 
IN_DBD_C Domain P03365_1655-1700 1.2e-22 1 CL0010 B 219 264   
rve Domain P03365_1492-1587 1.4e-22 1 CL0219 B 56 151   
Integrase_Zn Domain P03365_1441-1477 3.7e-18 1 No_clan B 5 54   
IN_DBD_C Domain P03365_1655-1700 2.2e-24 1 CL0010 C 219 264 KL  H-Bb S-Bb 
IN_DBD_C Domain P03365_1655-1700 2.2e-24 1 CL0010 D 219 264 I  H-Bb 
IN_DBD_C Domain P03365_1655-1700 1.2e-22 1 CL0010 E 219 264 ILK  H-Bb S-Bb L-Mj 
rve Domain P03365_1492-1587 1.5e-22 1 CL0219 E 56 151 KL  L-Bb 
Integrase_Zn Domain P03365_1441-1477 1.2e-17 1 No_clan E 5 45 IJ  H-Bb H-Mj 
IN_DBD_C Domain P03365_1655-1700 1.2e-22 1 CL0010 F 219 264   
rve Domain P03365_1492-1587 1.4e-22 1 CL0219 F 56 151   
Integrase_Zn Domain P03365_1441-1477 3.7e-18 1 No_clan F 5 54   
IN_DBD_C Domain P03365_1655-1700 2.2e-24 1 CL0010 G 219 264 IJ  H-Bb S-Bb 
IN_DBD_C Domain P03365_1655-1700 2.2e-24 1 CL0010 H 219 264 K   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/E/F=1437-1701, C/D/G/H=1653-1701 C viral nucleocapsid
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F aspartic-type endopeptidase activity
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F DNA binding
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F DNA-directed DNA polymerase activity
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F dUTP diphosphatase activity
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F RNA binding
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F RNA-directed DNA polymerase activity
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F RNA-DNA hybrid ribonuclease activity
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F structural constituent of virion
A/B/E/F=1437-1701, C/D/G/H=1653-1701 F zinc ion binding
A/B/E/F=1437-1701, C/D/G/H=1653-1701 P DNA integration
A/B/E/F=1437-1701, C/D/G/H=1653-1701 P DNA recombination
A/B/E/F=1437-1701, C/D/G/H=1653-1701 P establishment of integrated proviral latency
A/B/E/F=1437-1701, C/D/G/H=1653-1701 P viral entry into host cell
A/B/E/F=1437-1701, C/D/G/H=1653-1701 P viral genome integration into host DNA
Sequences
Download file with secondary structure created by Stride  
3jca.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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K (dna): 
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L (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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