General information
PDB ID 3K9F
Title DETAILED STRUCTURAL INSIGHT INTO THE QUINOLONE-DNA CLEAVAGE COMPLEX OF TYPE IIA TOPOISOMERASES
PDB header ISOMERASE/DNA
Date 2009-10-15
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism STREPTOCOCCUS PNEUMONIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3k9f.pdb ABCD EFGH 0
Biounits:
3k9f.pdb1.pdb ABCD EFGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_topoisoIV Family P72525_28-468 1.6e-146 1 No_clan A 28 468 EF  H-Bb L-Bb L-Mj L-Mn 
DNA_topoisoIV Family P72525_28-468 1.6e-146 1 No_clan B 28 468 GH  H-Bb L-Bb L-Mj L-Mn 
DNA_gyraseB_C Family Q59961_573-634 4.2e-30 1 No_clan C 572 634 F  H-Bb L-Bb 
Toprim Family Q59961_428-540 6.9e-18 1 CL0413 C 428 540 EFH  H-Bb S-Bb L-Bb L-Mn 
DNA_gyraseB_C Family Q59961_573-634 4.2e-30 1 No_clan D 572 634 H  H-Bb 
Toprim Family Q59961_428-540 6.9e-18 1 CL0413 D 428 540 FGH  H-Bb S-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-488 C chromosome
A/B=1-488 C extrinsic component of plasma membrane
A/B=1-488 F ATP binding
A/B=1-488 F DNA binding
A/B=1-488 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A/B=1-488 P chromosome segregation
A/B=1-488 P DNA topological change
C/D=404-647 C chromosome
C/D=404-647 F ATP binding
C/D=404-647 F DNA binding
C/D=404-647 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C/D=404-647 F metal ion binding
C/D=404-647 P chromosome segregation
C/D=404-647 P DNA topological change
Sequences
Download file with secondary structure created by Stride  
3k9f.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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