General information
PDB ID 3KK3
Title HIV-1 REVERSE TRANSCRIPTASE-DNA COMPLEX WITH GS-9148 TERMINATED PRIMER
PDB header TRANSFERASE/DNA
Date 2009-11-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3kk3.pdb AB PT 0
Biounits:
3kk3.pdb1.pdb AB PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RVT_connect Domain P04585_905-1006 2.5e-59 1 No_clan A 318 419 PT  H-Bb S-Bb L-Bb 
RVT_1 Domain P04585_650-821 7.3e-35 1 CL0027 A 63 234 PT  S-Bb S-Mn L-Bb L-Mn 
RNase_H Domain P04585_1023-1143 2.9e-28 1 CL0219 A 436 555 PT  L-Bb L-Mn 
RVT_thumb Domain P04585_828-891 1.1e-19 1 No_clan A 241 304 TP  H-Bb H-Mn L-Bb 
RVT_connect Domain P04585_905-1006 1.6e-54 1 No_clan B 318 419 P  H-Bb 
RVT_1 Domain P04585_650-821 1.2e-33 1 CL0027 B 63 258   
RVT_thumb Domain P04585_828-891 1.4e-21 1 No_clan B 241 304   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=588-1147, B=588-1027 C host cell nucleus
A=588-1147, B=588-1027 C host cell plasma membrane
A=588-1147, B=588-1027 C host multivesicular body
A=588-1147, B=588-1027 C viral nucleocapsid
A=588-1147, B=588-1027 C virion membrane
A=588-1147, B=588-1027 F aspartic-type endopeptidase activity
A=588-1147, B=588-1027 F DNA binding
A=588-1147, B=588-1027 F DNA-directed DNA polymerase activity
A=588-1147, B=588-1027 F exoribonuclease H activity
A=588-1147, B=588-1027 F identical protein binding
A=588-1147, B=588-1027 F integrase activity
A=588-1147, B=588-1027 F lipid binding
A=588-1147, B=588-1027 F peptidase activity
A=588-1147, B=588-1027 F RNA binding
A=588-1147, B=588-1027 F RNA-directed DNA polymerase activity
A=588-1147, B=588-1027 F RNA-DNA hybrid ribonuclease activity
A=588-1147, B=588-1027 F structural molecule activity
A=588-1147, B=588-1027 F zinc ion binding
A=588-1147, B=588-1027 P DNA recombination
A=588-1147, B=588-1027 P establishment of integrated proviral latency
A=588-1147, B=588-1027 P fusion of virus membrane with host plasma membrane
A=588-1147, B=588-1027 P induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process
A=588-1147, B=588-1027 P nuclear transport
A=588-1147, B=588-1027 P RNA-dependent DNA biosynthetic process
A=588-1147, B=588-1027 P suppression by virus of host gene expression
A=588-1147, B=588-1027 P uncoating of virus
A=588-1147, B=588-1027 P viral genome integration into host DNA
A=588-1147, B=588-1027 P viral genome packaging
A=588-1147, B=588-1027 P viral life cycle
A=588-1147, B=588-1027 P viral penetration into host nucleus
A=588-1147, B=588-1027 P virion assembly
Sequences
Download file with secondary structure created by Stride  
3kk3.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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