General information
PDB ID 3MVD
Title CRYSTAL STRUCTURE OF THE CHROMATIN FACTOR RCC1 IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE
PDB header SIGNALING PROTEIN/STRUCTURAL PROTEIN/DNA
Date 2010-05-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism XENOPUS LAEVIS, DROSOPHILA MELANOGASTER
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3mvd.pdb ABCDEFGHKL IJ 0
Biounits:
3mvd.pdb1.pdb ABCDEFGHKL IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 3.8e-46 1 CL0012 A 37 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_21-99 4.7e-08 1 CL0012 B 25 98 IJ  S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.9e-16 1 CL0012 C 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84233_39-132 8.2e-45 1 CL0012 E 40 131 IJ  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.2e-08 1 CL0012 F 23 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb 
Histone_H2A_C Family Q6AZJ8_92-120 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family Q6AZJ8_92-120 3.1e-17 1 No_clan G 91 118   
RCC1 Repeat P25171_92-141 1.4e-09 1 CL0186 K 92 141   
RCC1 Repeat P25171_363-414 4.6e-07 1 CL0186 K 363 414   
RCC1 Repeat P25171_42-89 1.1e-06 1 CL0186 K 42 89   
RCC1 Repeat P25171_42-89 4.2e-05 1 CL0186 K 144 193   
RCC1 Repeat P25171_363-414 0.00045 0 CL0186 K 196 255 IJ  L-Bb 
RCC1 Repeat P25171_92-141 1.4e-09 1 CL0186 L 92 141   
RCC1 Repeat P25171_363-414 4.7e-07 1 CL0186 L 363 414   
RCC1 Repeat P25171_42-89 1.1e-06 1 CL0186 L 42 89   
RCC1 Repeat P25171_42-89 4.3e-05 1 CL0186 L 144 193   
RCC1 Repeat P25171_363-414 0.00045 0 CL0186 L 196 255 J  L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleoplasm
A/E=2-136 C nucleosome
A/E=2-136 F DNA binding
A/E=2-136 F protein heterodimerization activity
B/F=2-103 C host cell nucleus
B/F=2-103 C nucleosome
B/F=2-103 C nucleus
B/F=2-103 F DNA binding
B/F=2-103 F protein heterodimerization activity
B/F=2-103 P DNA-templated transcription, initiation
D/H=5-126 C nucleosome
D/H=5-126 C nucleus
D/H=5-126 F DNA binding
D/H=5-126 F protein heterodimerization activity
K/L=2-422 C condensed chromosome
K/L=2-422 C cytoplasm
K/L=2-422 C nuclear chromatin
K/L=2-422 C nucleus
K/L=2-422 F chromatin binding
K/L=2-422 F Ran guanyl-nucleotide exchange factor activity
K/L=2-422 P cell cycle
K/L=2-422 P cell division
K/L=2-422 P central nervous system development
K/L=2-422 P NLS-bearing protein import into nucleus
K/L=2-422 P Ran protein signal transduction
K/L=2-422 P regulation of mitotic cell cycle
K/L=2-422 P regulation of mitotic spindle assembly
K/L=2-422 P regulation of neurogenesis
K/L=2-422 P regulation of nucleocytoplasmic transport
K/L=2-422 P ventral cord development
Sequences
Download file with secondary structure created by Stride  
3mvd.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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