General information
PDB ID 3RAE
Title QUINOLONE(LEVOFLOXACIN)-DNA CLEAVAGE COMPLEX OF TYPE IV TOPOISOMERASE FROM S. PNEUMONIAE
PDB header ISOMERASE/DNA/ANTIBIOTIC
Date 2011-03-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism STREPTOCOCCUS PNEUMONIAE
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3rae.pdb ABCD EFGH 0
Biounits:
3rae.pdb1.pdb ABCD EFGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_topoisoIV Family P72525_28-468 1.6e-146 1 No_clan A 28 468 EFG  H-Bb L-Bb L-Mj L-Mn 
DNA_topoisoIV Family P72525_28-468 1.6e-146 1 No_clan B 28 468 EGH  H-Bb L-Bb L-Mj L-Mn 
DNA_gyraseB_C Family Q59961_573-634 1.5e-29 1 No_clan C 565 634 F  H-Bb 
Toprim Family Q59961_428-540 1.8e-18 1 CL0413 C 428 540 EF  H-Bb S-Bb L-Bb L-Mn 
DNA_gyraseB_C Family Q59961_573-634 1.2e-29 1 No_clan D 567 634 H  H-Bb 
Toprim Family Q59961_428-540 1.9e-18 1 CL0413 D 428 540 GH  H-Bb S-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-488 C chromosome
A/B=1-488 C extrinsic component of plasma membrane
A/B=1-488 F ATP binding
A/B=1-488 F DNA binding
A/B=1-488 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A/B=1-488 P chromosome segregation
A/B=1-488 P DNA topological change
C/D=404-647 C chromosome
C/D=404-647 F ATP binding
C/D=404-647 F DNA binding
C/D=404-647 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C/D=404-647 F metal ion binding
C/D=404-647 P chromosome segregation
C/D=404-647 P DNA topological change
Sequences
Download file with secondary structure created by Stride  
3rae.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
G (dna): 
Click "SHOW" for view sequence
H (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text