General information
PDB ID 3T72
Title PHOB(E)-SIGMA70(4)-(RNAP-BETHA-FLAP-TIP-HELIX)-DNA TRANSCRIPTION ACTIVATION SUB-COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2011-07-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.33
Kind dna
Organism ESCHERICHIA COLI
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3t72.pdb ABEFIJMNRSVWZ14589cdghkloq CDGHKLOPTUXY2367abefijmn 0
Biounits:
3t72.pdb1.pdb ABq CD 1
3t72.pdb2.pdb EFo GH 1
3t72.pdb3.pdb IJ KL 1
3t72.pdb4.pdb MN OP 1
3t72.pdb5.pdb RS TU 1
3t72.pdb6.pdb VW XY 1
3t72.pdb7.pdb Z1 23 1
3t72.pdb8.pdb 45 67 1
3t72.pdb9.pdb 89 ab 1
3t72.pdb11.pdb gh ij 1
3t72.pdb12.pdb kl mn 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 1 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 4 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 5 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 8 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 9 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 A 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 B 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 E 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 F 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 g 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 h 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 I 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 J 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 k 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 l 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 M 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 N 149 225   
Sigma70_r4 Domain P00579_547-600 1.7e-20 1 CL0123 o 547 600   
Sigma70_r4 Domain P00579_547-600 1.7e-20 1 CL0123 q 547 600   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 R 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 S 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 V 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 W 149 225   
Trans_reg_C Domain P0AFJ5_149-225 1.5e-29 1 CL0123 Z 149 225   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 C cytosol
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 C protein-DNA complex
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 F bacterial-type RNA polymerase holo enzyme binding
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 F DNA-binding transcription activator activity
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 F DNA-binding transcription factor activity
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 F identical protein binding
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 F phosphorelay response regulator activity
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 F transcription regulatory region sequence-specific DNA binding
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 P phosphate ion transport
1/4/5/8/9/A/B/E/F/I/J/M/N/R/S/V/W/Z/c/d/g/h/k/l=128-229 P regulation of DNA-templated transcription, initiation
o/q=533-609 C cytosol
o/q=533-609 F DNA binding
o/q=533-609 F DNA-binding transcription factor activity
o/q=533-609 F sigma factor activity
o/q=533-609 P response to heat
o/q=533-609 P transcription initiation from bacterial-type RNA polymerase promoter
o/q=896-910 C cytoplasm
o/q=896-910 C cytosol
o/q=896-910 C membrane
o/q=896-910 F DNA binding
o/q=896-910 F DNA-directed 5'-3' RNA polymerase activity
o/q=896-910 F ribonucleoside binding
o/q=896-910 P response to antibiotic
o/q=896-910 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
3t72.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
q (protein): 
Click "SHOW" for view sequence
3t72.pdb11.pdb:   [ download sequences in FASTA format ]
i (dna): 
Click "SHOW" for view sequence
j (dna): 
Click "SHOW" for view sequence
g (protein): 
Click "SHOW" for view sequence
h (protein): 
Click "SHOW" for view sequence
3t72.pdb12.pdb:   [ download sequences in FASTA format ]
m (dna): 
Click "SHOW" for view sequence
n (dna): 
Click "SHOW" for view sequence
k (protein): 
Click "SHOW" for view sequence
l (protein): 
Click "SHOW" for view sequence
3t72.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
Click "SHOW" for view sequence
H (dna): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
o (protein): 
Click "SHOW" for view sequence
3t72.pdb3.pdb:   [ download sequences in FASTA format ]
K (dna): 
Click "SHOW" for view sequence
L (dna): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
3t72.pdb4.pdb:   [ download sequences in FASTA format ]
O (dna): 
Click "SHOW" for view sequence
P (dna): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
3t72.pdb5.pdb:   [ download sequences in FASTA format ]
T (dna): 
Click "SHOW" for view sequence
U (dna): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
3t72.pdb6.pdb:   [ download sequences in FASTA format ]
X (dna): 
Click "SHOW" for view sequence
Y (dna): 
Click "SHOW" for view sequence
V (protein): 
Click "SHOW" for view sequence
W (protein): 
Click "SHOW" for view sequence
3t72.pdb7.pdb:   [ download sequences in FASTA format ]
2 (dna): 
Click "SHOW" for view sequence
3 (dna): 
Click "SHOW" for view sequence
1 (protein): 
Click "SHOW" for view sequence
Z (protein): 
Click "SHOW" for view sequence
3t72.pdb8.pdb:   [ download sequences in FASTA format ]
6 (dna): 
Click "SHOW" for view sequence
7 (dna): 
Click "SHOW" for view sequence
4 (protein): 
Click "SHOW" for view sequence
5 (protein): 
Click "SHOW" for view sequence
3t72.pdb9.pdb:   [ download sequences in FASTA format ]
a (dna): 
Click "SHOW" for view sequence
b (dna): 
Click "SHOW" for view sequence
8 (protein): 
Click "SHOW" for view sequence
9 (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text