General information
PDB ID 3TU4
Title CRYSTAL STRUCTURE OF THE SIR3 BAH DOMAIN IN COMPLEX WITH A NUCLEOSOME CORE PARTICLE.
PDB header SIGNALING PROTEIN/STRUCTURAL PROTEIN/DNA
Date 2011-09-15
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism XENOPUS LAEVIS, SACCHAROMYCES CEREVISIAE S288C
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3tu4.pdb ABCDEFGHKL IJ 0
Biounits:
3tu4.pdb1.pdb ABCDEFGHKL IJ 1
3tu4.pdb2.pdb ABCDEFGH IJ 1
3tu4.pdb3.pdb K 1
3tu4.pdb4.pdb L 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 3.8e-46 1 CL0012 A 37 131 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84233_39-132 3.8e-46 1 CL0012 A 37 131 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84233_39-132 3.8e-46 1 CL0012 A 37 131 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84233_39-132 3.8e-46 1 CL0012 A 37 131 IJ  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.4e-08 1 CL0012 B 18 98 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.4e-08 1 CL0012 B 18 98 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.4e-08 1 CL0012 B 18 98 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.4e-08 1 CL0012 B 18 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 C 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 C 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 C 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 C 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P84233_39-132 8.2e-45 1 CL0012 E 40 131 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84233_39-132 8.2e-45 1 CL0012 E 40 131 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84233_39-132 8.2e-45 1 CL0012 E 40 131 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84233_39-132 8.2e-45 1 CL0012 E 40 131 IJ  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.6e-08 1 CL0012 F 18 98 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.6e-08 1 CL0012 F 18 98 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.6e-08 1 CL0012 F 18 98 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.6e-08 1 CL0012 F 18 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb L-Mn 
BAH Domain P06701_48-188 2e-24 1 No_clan K 48 188   
BAH Domain P06701_48-188 2e-24 1 No_clan K 48 188   
BAH Domain P06701_48-188 2e-24 1 No_clan K 48 188   
BAH Domain P06701_48-188 2e-24 1 No_clan K 48 188   
BAH Domain P06701_48-188 2e-24 1 No_clan L 48 188   
BAH Domain P06701_48-188 2e-24 1 No_clan L 48 188   
BAH Domain P06701_48-188 2e-24 1 No_clan L 48 188   
BAH Domain P06701_48-188 2e-24 1 No_clan L 48 188   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan G 91 118   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan G 91 118   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan G 91 118   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleoplasm
A/E=2-136 C nucleosome
A/E=2-136 F DNA binding
A/E=2-136 F protein heterodimerization activity
B/F=2-103 C host cell nucleus
B/F=2-103 C nucleosome
B/F=2-103 C nucleus
B/F=2-103 F DNA binding
B/F=2-103 F protein heterodimerization activity
B/F=2-103 P DNA-templated transcription, initiation
C/G=2-130 C nucleosome
C/G=2-130 C nucleus
C/G=2-130 F DNA binding
C/G=2-130 F protein heterodimerization activity
D/H=5-126 C nucleosome
D/H=5-126 C nucleus
D/H=5-126 F DNA binding
D/H=5-126 F protein heterodimerization activity
K/L=1-213 C chromatin silencing complex
K/L=1-213 C chromosome, telomeric region
K/L=1-213 C mitochondrion
K/L=1-213 C nuclear chromosome, telomeric region
K/L=1-213 C nuclear heterochromatin
K/L=1-213 C nucleolus
K/L=1-213 F chromatin binding
K/L=1-213 F double-stranded DNA binding
K/L=1-213 F identical protein binding
K/L=1-213 F nucleosomal histone binding
K/L=1-213 F nucleosome binding
K/L=1-213 F single-stranded DNA binding
K/L=1-213 P chromatin silencing at telomere
K/L=1-213 P double-strand break repair via nonhomologous end joining
K/L=1-213 P establishment of protein-containing complex localization to telomere
K/L=1-213 P heterochromatin assembly
K/L=1-213 P negative regulation of chromatin silencing involved in replicative cell aging
K/L=1-213 P nuclear-transcribed mRNA catabolic process, non-stop decay
K/L=1-213 P silent mating-type cassette heterochromatin assembly
K/L=1-213 P telomere tethering at nuclear periphery
Sequences
Download file with secondary structure created by Stride  
3tu4.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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3tu4.pdb2.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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3tu4.pdb3.pdb:   [ download sequences in FASTA format ]
K (protein): 
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3tu4.pdb4.pdb:   [ download sequences in FASTA format ]
L (protein): 
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