General information
PDB ID 3U5Z
Title STRUCTURE OF T4 BACTERIOPHAGE CLAMP LOADER BOUND TO THE T4 CLAMP, PRIMER-TEMPLATE DNA, AND ATP ANALOG
PDB header DNA BINDING PROTEIN/DNA
Date 2011-10-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.5
Kind dna
Organism ENTEROBACTERIA PHAGE T4
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3u5z.pdb BCDEAGHFLMNOKQRP IJST 0
Biounits:
3u5z.pdb1.pdb BCDEAGHF IJ 1
3u5z.pdb2.pdb LMNOKQRP ST 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Phage_clamp_A Domain P04527_37-173 3.5e-81 1 No_clan A 37 173 I  H-Mj H-Mn 
AAA Domain P04526_46-160 5.8e-14 1 CL0023 B 46 160 I  H-Bb L-Bb 
AAA Domain P04526_46-160 5.8e-14 1 CL0023 C 46 160 I  H-Bb L-Bb 
AAA Domain P04526_46-160 5.8e-14 1 CL0023 D 46 160 I  H-Bb L-Bb 
AAA Domain P04526_46-160 5.7e-14 1 CL0023 E 46 159 I  H-Bb 
gp45-slide_C Domain P04525_115-222 1.1e-44 1 CL0060 F 7115 7222 J  H-Bb 
DNA_PPF Domain P04525_1-109 8.9e-28 1 CL0060 F 7002 7109   
gp45-slide_C Domain P04525_115-222 1.1e-44 1 CL0060 G 5115 5222   
DNA_PPF Domain P04525_1-109 8.9e-28 1 CL0060 G 5002 5109   
gp45-slide_C Domain P04525_115-222 1.1e-44 1 CL0060 H 6115 6222 I  H-Bb 
DNA_PPF Domain P04525_1-109 8.9e-28 1 CL0060 H 6002 6109   
Phage_clamp_A Domain P04527_37-173 3.5e-81 1 No_clan K 37 173 S  H-Mj H-Mn 
AAA Domain P04526_46-160 5.8e-14 1 CL0023 L 46 160 S  H-Bb L-Bb 
AAA Domain P04526_46-160 5.8e-14 1 CL0023 M 46 160 S  H-Bb L-Bb 
AAA Domain P04526_46-160 5.8e-14 1 CL0023 N 46 160 S  H-Bb L-Bb 
AAA Domain P04526_46-160 5.7e-14 1 CL0023 O 46 159 S  H-Bb L-Bb 
gp45-slide_C Domain P04525_115-222 1.1e-44 1 CL0060 P 7115 7222   
DNA_PPF Domain P04525_1-109 8.9e-28 1 CL0060 P 7002 7109   
gp45-slide_C Domain P04525_115-222 1.1e-44 1 CL0060 Q 5115 5222   
DNA_PPF Domain P04525_1-109 8.9e-28 1 CL0060 Q 5002 5109   
gp45-slide_C Domain P04525_115-222 1.1e-44 1 CL0060 R 6115 6222   
DNA_PPF Domain P04525_1-109 8.9e-28 1 CL0060 R 6002 6109   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/K=2-187 F DNA binding
A/K=2-187 P bidirectional double-stranded viral DNA replication
A/K=2-187 P DNA replication
B/C/D/E/L/M/N/O=1-319 F ATP binding
B/C/D/E/L/M/N/O=1-319 F DNA binding
B/C/D/E/L/M/N/O=1-319 P bidirectional double-stranded viral DNA replication
B/C/D/E/L/M/N/O=1-319 P DNA replication
F/G/H/P/Q/R=1-228 P bidirectional double-stranded viral DNA replication
F/G/H/P/Q/R=1-228 P DNA replication
Sequences
Download file with secondary structure created by Stride  
3u5z.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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3u5z.pdb2.pdb:   [ download sequences in FASTA format ]
S (dna): 
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T (dna): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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