General information
PDB ID 4GFH
Title TOPOISOMERASE II-DNA-AMPPNP COMPLEX
PDB header ISOMERASE/DNA
Date 2012-08-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.41
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4gfh.pdb AF BCDEGHIJ 0
Biounits:
4gfh.pdb1.pdb AF BCDEGHIJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_gyraseB Domain P06786_246-404 6.2e-25 1 CL0329 A 246 399   
HATPase_c Domain P06786_55-205 1.6e-13 1 CL0025 A 55 205   
DNA_gyraseB Domain P06786_246-404 5.9e-25 1 CL0329 F 246 404   
HATPase_c Domain P06786_55-205 1.6e-13 1 CL0025 F 55 205   
DNA_topoisoIV Family P06786_690-1160 1.9e-126 1 No_clan A 690 1160 BCDE  H-Mj S-Bb S-Mj S-Mn L-Bb 
TOPRIM_C Family P06786_559-688 4.8e-41 1 No_clan A 559 688 CE  H-Bb 
Toprim Family P06786_444-559 4.1e-07 1 CL0413 A 444 559 CEHJ  H-Bb L-Bb 
DNA_topoisoIV Family P06786_690-1160 1.9e-126 1 No_clan F 690 1160 GHIJ  H-Mj S-Bb S-Mj S-Mn L-Bb 
TOPRIM_C Family P06786_559-688 4.7e-41 1 No_clan F 559 688 HJ  H-Bb 
Toprim Family P06786_444-559 4.1e-07 1 CL0413 F 444 559 CEHJ  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/F=1-1177 C DNA replication termination region
A/F=1-1177 C mitochondrion
A/F=1-1177 C nucleus
A/F=1-1177 C synaptonemal complex
A/F=1-1177 F ATP binding
A/F=1-1177 F DNA binding
A/F=1-1177 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A/F=1-1177 F identical protein binding
A/F=1-1177 F metal ion binding
A/F=1-1177 P chromatin assembly or disassembly
A/F=1-1177 P chromatin remodeling at centromere
A/F=1-1177 P DNA strand elongation involved in DNA replication
A/F=1-1177 P DNA topological change
A/F=1-1177 P gene looping
A/F=1-1177 P mitotic DNA integrity checkpoint
A/F=1-1177 P reciprocal meiotic recombination
A/F=1-1177 P regulation of mitotic recombination
A/F=1-1177 P replication fork progression beyond termination site
A/F=1-1177 P resolution of meiotic recombination intermediates
A/F=1-1177 P rRNA transcription
A/F=1-1177 P sister chromatid segregation
Sequences
Download file with secondary structure created by Stride  
4gfh.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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D (dna): 
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E (dna): 
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G (dna): 
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H (dna): 
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I (dna): 
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J (dna): 
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A (protein): 
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F (protein): 
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