General information
PDB ID 4GZZ
Title CRYSTAL STRUCTURES OF BACTERIAL RNA POLYMERASE PAUSED ELONGATION COMPLEXES
PDB header TRANSCRIPTION/DNA-RNA HYBRID
Date 2012-09-06
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.29
Kind hybrid
Organism THERMUS THERMOPHILUS, SYNTHETIC
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4gzz.pdb ABCDE NT R 0
Biounits:
4gzz.pdb1.pdb ABCDE NT R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain Q5SHR6_52-180 1.9e-25 1 No_clan A 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1e-21 1 CL0509 A 26 222   
RNA_pol_A_bac Domain Q5SHR6_52-180 1.9e-25 1 No_clan B 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1e-21 1 CL0509 B 26 222   
RNA_pol_Rpb2_6 Domain Q8RQE9_596-1026 6.1e-136 1 CL0410 C 596 1026 R   
RNA_pol_Rpb2_3 Domain Q8RQE9_393-461 5e-28 1 No_clan C 393 461 T   
RNA_pol_Rpb2_7 Domain Q8RQE9_1028-1104 8.1e-26 1 No_clan C 1028 1104 T   
RNA_pol_Rpb2_45 Domain Q8RQE9_471-535 1.8e-24 1 No_clan C 471 535   
RNA_pol_Rpb2_2 Domain Q8RQE9_142-334 6.3e-11 1 No_clan C 142 334   
RNA_pol_Rpb1_1 Domain Q8RQE8_2-495 4.7e-82 1 No_clan D 2 618 T   
RNA_pol_Rpb1_2 Domain Q8RQE8_620-765 1.2e-35 1 No_clan D 620 765 RT   
RNA_pol_Rpb1_5 Domain Q8RQE8_1064-1296 5.9e-32 1 No_clan D 1064 1256 T   
RNA_pol_Rpb1_3 Domain Q8RQE8_768-954 8.1e-29 1 No_clan D 768 954   
RNA_pol_Rpb1_5 Domain Q8RQE8_1266-1432 5.6e-14 1 No_clan D 1257 1432   
RNA_pol_Rpb1_4 Domain Q8RQE8_983-1069 8.2e-14 1 No_clan D 983 1069   
RNA_pol_Rpb2_1 Family Q8RQE9_17-380 4.9e-38 1 No_clan C 17 380   
RNA_pol_Rpb6 Family Q8RQE7_8-75 1.3e-07 1 No_clan E 8 75   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-315 F DNA binding
A/B=1-315 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-315 F protein dimerization activity
A/B=1-315 P transcription, DNA-templated
C=1-1119 F DNA binding
C=1-1119 F DNA-directed 5'-3' RNA polymerase activity
C=1-1119 F ribonucleoside binding
C=1-1119 P transcription, DNA-templated
D=1-1524 F DNA binding
D=1-1524 F DNA-directed 5'-3' RNA polymerase activity
D=1-1524 F magnesium ion binding
D=1-1524 F zinc ion binding
D=1-1524 P transcription, DNA-templated
E=1-99 F DNA binding
E=1-99 F DNA-directed 5'-3' RNA polymerase activity
E=1-99 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
4gzz.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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R (rna): 
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