General information
PDB ID 4JBM
Title STRUCTURE OF MURINE DNA BINDING PROTEIN BOUND WITH DS DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2013-02-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.22
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4jbm.pdb AB TR 0
Biounits:
4jbm.pdb1.pdb A TR 1
4jbm.pdb2.pdb B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HIN Family Q91VJ1_158-321 1.5e-63 1 CL0021 A 1 165 RT  H-Bb H-Mj S-Bb L-Bb 
HIN Family Q91VJ1_158-321 1.1e-66 1 CL0021 B 1 165   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=158-349 C AIM2 inflammasome complex
A/B=158-349 C cytoplasm
A/B=158-349 C cytosol
A/B=158-349 C mitochondrion
A/B=158-349 C nucleoplasm
A/B=158-349 F double-stranded DNA binding
A/B=158-349 F identical protein binding
A/B=158-349 P activation of innate immune response
A/B=158-349 P apoptotic process
A/B=158-349 P cellular response to drug
A/B=158-349 P cellular response to interferon-beta
A/B=158-349 P inflammatory response
A/B=158-349 P innate immune response
A/B=158-349 P interleukin-1 beta production
A/B=158-349 P negative regulation of NF-kappaB transcription factor activity
A/B=158-349 P NLRP3 inflammasome complex assembly
A/B=158-349 P positive regulation of cysteine-type endopeptidase activity
A/B=158-349 P positive regulation of defense response to virus by host
A/B=158-349 P positive regulation of interleukin-1 beta production
A/B=158-349 P positive regulation of NF-kappaB transcription factor activity
A/B=158-349 P pyroptosis
A/B=158-349 P pyroptosome complex assembly
A/B=158-349 P tumor necrosis factor-mediated signaling pathway
Sequences
Download file with secondary structure created by Stride  
4jbm.pdb1.pdb:   [ download sequences in FASTA format ]
R (dna): 
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T (dna): 
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A (protein): 
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4jbm.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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