General information
PDB ID 4M8O
Title TERNARY COMPLEX OF DNA POLYMERASE EPSILON WITH AN INCOMING DATP
PDB header TRANSFERASE/DNA
Date 2013-08-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.2
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4m8o.pdb A PT 0
Biounits:
4m8o.pdb1.pdb A PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_exo1 Family P21951_121-442 1e-82 1 CL0219 A 121 442 P  H-Bb 
DNA_pol_B Family P21951_634-1106 5.4e-12 1 CL0194 A 634 1097 PT  H-Bb H-Mn S-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-1228 C epsilon DNA polymerase complex
A=1-1228 C replication fork
A=1-1228 F 4 iron, 4 sulfur cluster binding
A=1-1228 F DNA binding
A=1-1228 F DNA-directed DNA polymerase activity
A=1-1228 F double-stranded DNA binding
A=1-1228 F mRNA binding
A=1-1228 F nucleotide binding
A=1-1228 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
A=1-1228 F single-stranded DNA binding
A=1-1228 F SUMO binding
A=1-1228 F zinc ion binding
A=1-1228 P base-excision repair
A=1-1228 P base-excision repair, gap-filling
A=1-1228 P DNA replication proofreading
A=1-1228 P DNA-dependent DNA replication
A=1-1228 P double-strand break repair
A=1-1228 P double-strand break repair via nonhomologous end joining
A=1-1228 P error-prone translesion synthesis
A=1-1228 P gene conversion
A=1-1228 P heterochromatin organization involved in chromatin silencing
A=1-1228 P intra-S DNA damage checkpoint
A=1-1228 P leading strand elongation
A=1-1228 P mitotic cell cycle
A=1-1228 P mitotic DNA replication checkpoint
A=1-1228 P mitotic sister chromatid cohesion
A=1-1228 P nucleotide-excision repair, DNA gap filling
Sequences
Download file with secondary structure created by Stride  
4m8o.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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