General information
PDB ID 4QLC
Title CRYSTAL STRUCTURE OF CHROMATOSOME AT 3.5 ANGSTROM RESOLUTION
PDB header CHROMATIN BINDING PROTEIN/DNA
Date 2014-06-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.5
Kind dna
Organism HOMO SAPIENS, DROSOPHILA MELANOGASTER, GALLUS GALLUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4qlc.pdb ABCDEFGHU IJ 0
Biounits:
4qlc.pdb1.pdb ABCDEFGHU IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P02299_39-132 3.7e-46 1 CL0012 A 38 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P84040_23-99 4.2e-08 1 CL0012 B 26 98 IJ  S-Bb L-Bb 
Histone Domain P84051_14-90 1e-14 1 CL0012 C 14 89 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02283_29-99 5.2e-22 1 CL0012 D 29 98 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P02299_39-132 3.7e-46 1 CL0012 E 38 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P84040_23-99 4.6e-08 1 CL0012 F 26 98 IJ  S-Bb L-Bb 
Histone Domain P84051_14-90 8.6e-15 1 CL0012 G 13 89 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02283_29-99 3.1e-22 1 CL0012 H 28 98 IJ  H-Bb S-Bb L-Bb 
Linker_histone Domain P02259_26-97 4.1e-26 1 CL0123 U 25 96 IJ  H-Bb S-Bb S-Mn 
Histone_H2A_C Family P84051_91-119 8e-18 1 No_clan C 90 117   
Histone_H2A_C Family P84051_91-119 8e-17 1 No_clan G 90 116   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nuclear chromatin
A/E=2-136 C nuclear nucleosome
A/E=2-136 C nucleus
A/E=2-136 C polytene chromosome
A/E=2-136 C RCAF complex
A/E=2-136 F nucleosomal DNA binding
A/E=2-136 F protein heterodimerization activity
A/E=2-136 P nucleosome assembly
B/F=2-103 C chromosome
B/F=2-103 C host cell nucleus
B/F=2-103 C nuclear chromosome
B/F=2-103 C nucleosome
B/F=2-103 C RCAF complex
B/F=2-103 F DNA binding
B/F=2-103 F histone binding
B/F=2-103 F protein heterodimerization activity
B/F=2-103 P DNA-templated transcription, initiation
B/F=2-103 P nucleosome assembly
C/G=2-124 C chromosome
C/G=2-124 C nuclear chromatin
C/G=2-124 C nuclear nucleosome
C/G=2-124 C nucleosome
C/G=2-124 C nucleus
C/G=2-124 C polytene chromosome
C/G=2-124 C polytene chromosome band
C/G=2-124 F DNA binding
C/G=2-124 F protein heterodimerization activity
C/G=2-124 P chromatin organization
C/G=2-124 P chromatin silencing
C/G=2-124 P larval somatic muscle development
C/G=2-124 P nucleosome assembly
D/H=2-123 C nucleosome
D/H=2-123 C nucleus
D/H=2-123 F DNA binding
D/H=2-123 F protein heterodimerization activity
D/H=2-123 F protein-containing complex binding
D/H=2-123 P chromatin assembly or disassembly
D/H=2-123 P nucleosome assembly
U=23-99 C host cell nucleus
U=23-99 C nucleosome
U=23-99 C nucleus
U=23-99 F double-stranded DNA binding
U=23-99 F nucleosomal DNA binding
U=23-99 P chromatin organization
U=23-99 P chromosome condensation
U=23-99 P negative regulation of chromatin silencing
U=23-99 P negative regulation of DNA recombination
U=23-99 P nucleosome assembly
U=23-99 P nucleosome positioning
U=23-99 P regulation of transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
4qlc.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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U (protein): 
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