General information
PDB ID 4RBO
Title CRYSTAL STRUCTURE OF A NANOG HOMEOBOX (NANOG) FROM HOMO SAPIENS AT 3.30 A RESOLUTION
PDB header DNA BINDING PROTEIN, TRANSCRIPTION/DNA
Date 2014-09-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4rbo.pdb AD BCEF 0
Biounits:
4rbo.pdb1.pdb A BC 1
4rbo.pdb2.pdb D EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain Q9H9S0_100-152 6.8e-19 1 CL0123 A 100 152 BC  H-Bb H-Mj L-Bb 
Homeodomain Domain Q9H9S0_100-152 6.4e-19 1 CL0123 D 100 152 EF  H-Bb H-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/D=94-162 C nuclear chromatin
A/D=94-162 C nucleolus
A/D=94-162 C nucleoplasm
A/D=94-162 C nucleus
A/D=94-162 F DNA binding
A/D=94-162 F DNA-binding transcription factor activity
A/D=94-162 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/D=94-162 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/D=94-162 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/D=94-162 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/D=94-162 F sequence-specific DNA binding
A/D=94-162 F sequence-specific double-stranded DNA binding
A/D=94-162 F transcription regulatory region sequence-specific DNA binding
A/D=94-162 P cell differentiation
A/D=94-162 P cytokine-mediated signaling pathway
A/D=94-162 P endodermal cell fate specification
A/D=94-162 P positive regulation of stem cell proliferation
A/D=94-162 P positive regulation of transcription by RNA polymerase II
A/D=94-162 P regulation of cell differentiation
A/D=94-162 P regulation of gene expression
A/D=94-162 P regulation of transcription by RNA polymerase II
A/D=94-162 P regulation of transcription, DNA-templated
A/D=94-162 P somatic stem cell population maintenance
A/D=94-162 P stem cell population maintenance
Sequences
Download file with secondary structure created by Stride  
4rbo.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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4rbo.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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D (protein): 
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