General information
PDB ID 4S20
Title STRUCTURAL BASIS FOR TRANSCRIPTION REACTIVATION BY RAPA
PDB header TRANSFERASE/DNA/RNA
Date 2015-01-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.7
Kind hybrid
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4s20.pdb ABCDEFGHIJKL MO NP 0
Biounits:
4s20.pdb1.pdb ABCDEL O P 1
4s20.pdb2.pdb FGHIJK M N 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 8.9e-24 1 No_clan A 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-22 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.9e-24 1 No_clan B 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 1e-159 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.5e-29 1 No_clan C 513 581   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 1.8e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 2.6e-27 1 No_clan C 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_150-334 1e-25 1 No_clan C 151 454   
RNA_pol_Rpb1_1 Domain 5.8e-90 1 No_clan D 14 342 OP
RNA_pol_Rpb1_5 Domain 8e-40 1 No_clan D 766 1136 O
RNA_pol_Rpb1_2 Domain 3.1e-27 1 No_clan D 382 486 O
RNA_pol_Rpb1_3 Domain 4.1e-27 1 No_clan D 489 644
RNA_pol_Rpb1_5 Domain 9.1e-19 1 No_clan D 1148 1317
RNA_pol_Rpb1_4 Domain 1.2e-18 1 No_clan D 673 764
RNA_pol_Rpb1_2 Domain 1.1e-07 1 No_clan D 344 401
RNA_pol_A_bac Domain P0A7Z4_58-186 8.9e-24 1 No_clan F 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-22 1 CL0509 F 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.9e-24 1 No_clan G 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-22 1 CL0509 G 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 2.8e-159 1 CL0410 H 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.5e-29 1 No_clan H 513 581 M   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 1.8e-27 1 No_clan H 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 2.6e-27 1 No_clan H 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_150-334 9.9e-26 1 No_clan H 151 454   
RNA_pol_Rpb1_1 Domain 5.9e-90 1 No_clan I 14 342 MN
RNA_pol_Rpb1_5 Domain 8.6e-40 1 No_clan I 766 1136 M
RNA_pol_Rpb1_2 Domain 3.5e-27 1 No_clan I 386 486 M
RNA_pol_Rpb1_3 Domain 4.1e-27 1 No_clan I 489 644
RNA_pol_Rpb1_5 Domain 9.3e-19 1 No_clan I 1148 1317
RNA_pol_Rpb1_4 Domain 1.2e-18 1 No_clan I 673 764
RNA_pol_Rpb1_2 Domain 1.1e-07 1 No_clan I 344 401
RapA_C Domain P60240_605-962 9.7e-154 1 No_clan K 605 962   
Tudor_RapA Domain P60240_55-118 5.7e-27 1 CL0049 K 55 118   
Tudor_1_RapA Domain P60240_3-53 9.9e-24 1 CL0049 K 3 53   
SNF2-rel_dom Domain P60240_159-472 3.2e-18 1 CL0023 K 159 472   
Helicase_C Domain P60240_490-601 3.1e-16 1 CL0023 K 490 601   
RapA_C Domain P60240_605-962 9.7e-154 1 No_clan L 605 962   
Tudor_RapA Domain P60240_55-118 5.7e-27 1 CL0049 L 55 118   
Tudor_1_RapA Domain P60240_3-53 9.9e-24 1 CL0049 L 3 53   
SNF2-rel_dom Domain P60240_159-472 3.2e-18 1 CL0023 L 159 472   
Helicase_C Domain P60240_490-601 3.1e-16 1 CL0023 L 490 601   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 1.5e-58 1 No_clan C 26 500   
RNA_pol_Rpb6 Family 3.5e-17 1 No_clan E 8 60
RNA_pol_Rpb2_1 Family P0A8V2_26-500 1.5e-58 1 No_clan H 26 500   
RNA_pol_Rpb6 Family 3.5e-17 1 No_clan J 8 60
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/F/G=1-329 C cytoplasm
A/B/F/G=1-329 C cytosol
A/B/F/G=1-329 C membrane
A/B/F/G=1-329 F DNA binding
A/B/F/G=1-329 F DNA-directed 5'-3' RNA polymerase activity
A/B/F/G=1-329 F protein dimerization activity
A/B/F/G=1-329 P transcription, DNA-templated
C/H=1-1342 C cytoplasm
C/H=1-1342 C cytosol
C/H=1-1342 C membrane
C/H=1-1342 F DNA binding
C/H=1-1342 F DNA-directed 5'-3' RNA polymerase activity
C/H=1-1342 F ribonucleoside binding
C/H=1-1342 P response to antibiotic
C/H=1-1342 P transcription, DNA-templated
K/L=1-968 C cytoplasm
K/L=1-968 F ATP binding
K/L=1-968 F ATPase activity
K/L=1-968 F bacterial-type RNA polymerase core enzyme binding
K/L=1-968 F DNA binding
K/L=1-968 F helicase activity
K/L=1-968 F nucleic acid binding
K/L=1-968 P positive regulation of transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
4s20.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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L (protein): 
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P (rna): 
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4s20.pdb2.pdb:   [ download sequences in FASTA format ]
M (dna): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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N (rna): 
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