General information
PDB ID 4YJ0
Title CRYSTAL STRUCTURE OF THE DM DOMAIN OF HUMAN DMRT1 BOUND TO 25MER TARGET DNA
PDB header TRANSCRIPTION
Date 2015-03-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.81
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4yj0.pdb ABC DE 0
Biounits:
4yj0.pdb1.pdb ABC DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DM Family Q9Y5R6_72-118 7.3e-24 1 No_clan A 72 118 DE  H-Bb H-Mj L-Bb 
DM Family Q9Y5R6_72-118 7.7e-24 1 No_clan B 72 118 DE  H-Bb H-Mj L-Bb L-Mn 
DM Family Q9Y5R6_72-118 7.7e-24 1 No_clan C 72 118 DE  H-Bb H-Mj S-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C=70-131 C cytoplasm
A/B/C=70-131 C nuclear chromatin
A/B/C=70-131 C nucleus
A/B/C=70-131 F chromatin binding
A/B/C=70-131 F cis-regulatory region sequence-specific DNA binding
A/B/C=70-131 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B/C=70-131 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B/C=70-131 F identical protein binding
A/B/C=70-131 F metal ion binding
A/B/C=70-131 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/B/C=70-131 F sequence-specific double-stranded DNA binding
A/B/C=70-131 P cell morphogenesis
A/B/C=70-131 P germ cell migration
A/B/C=70-131 P intracellular signal transduction
A/B/C=70-131 P male germ cell proliferation
A/B/C=70-131 P male sex determination
A/B/C=70-131 P male sex differentiation
A/B/C=70-131 P negative regulation of meiotic nuclear division
A/B/C=70-131 P negative regulation of transcription by RNA polymerase II
A/B/C=70-131 P oocyte development
A/B/C=70-131 P positive regulation of male gonad development
A/B/C=70-131 P positive regulation of meiosis I
A/B/C=70-131 P positive regulation of mitotic nuclear division
A/B/C=70-131 P positive regulation of transcription by RNA polymerase II
A/B/C=70-131 P regulation of nodal signaling pathway
A/B/C=70-131 P Sertoli cell development
A/B/C=70-131 P Sertoli cell differentiation
A/B/C=70-131 P spermatogenesis
Sequences
Download file with secondary structure created by Stride  
4yj0.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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