General information
PDB ID 5C53
Title PROBING THE STRUCTURAL AND MOLECULAR BASIS OF NUCLEOTIDE SELECTIVITY BY HUMAN MITOCHONDRIAL DNA POLYMERASE GAMMA
PDB header TRANSFERASE/DNA
Date 2015-06-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.57
Kind dna
Organism HOMO SAPIENS, DNA LAUNCH VECTOR PDE-GFP2
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5c53.pdb ABC TP 0
Biounits:
5c53.pdb1.pdb ABC TP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNApol_Exo Domain P54098_121-414 1.7e-94 1 No_clan A 121 414 T  H-Bb 
HGTP_anticodon Domain Q9UHN1_379-478 7.4e-11 1 CL0458 B 379 478   
HGTP_anticodon Domain Q9UHN1_379-478 7.3e-11 1 CL0458 C 379 478   
DNA_pol_A Family P54098_755-1188 1.6e-61 1 No_clan A 755 1188 PT  H-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=25-1239 C gamma DNA polymerase complex
A=25-1239 C mitochondrial nucleoid
A=25-1239 C mitochondrion
A=25-1239 C protein-containing complex
A=25-1239 C terminal bouton
A=25-1239 F 3'-5' exonuclease activity
A=25-1239 F chromatin binding
A=25-1239 F DNA binding
A=25-1239 F DNA-directed DNA polymerase activity
A=25-1239 F protease binding
A=25-1239 P aging
A=25-1239 P base-excision repair, gap-filling
A=25-1239 P cellular response to glucose stimulus
A=25-1239 P DNA metabolic process
A=25-1239 P DNA-dependent DNA replication
A=25-1239 P mitochondrial DNA replication
A=25-1239 P response to gamma radiation
A=25-1239 P response to hyperoxia
A=25-1239 P response to light stimulus
B/C=1-485 C cytoplasm
B/C=1-485 C gamma DNA polymerase complex
B/C=1-485 C mitochondrial matrix
B/C=1-485 C mitochondrial nucleoid
B/C=1-485 C mitochondrion
B/C=1-485 F DNA polymerase binding
B/C=1-485 F DNA polymerase processivity factor activity
B/C=1-485 F DNA-directed DNA polymerase activity
B/C=1-485 F double-stranded DNA binding
B/C=1-485 F identical protein binding
B/C=1-485 P DNA repair
B/C=1-485 P DNA-dependent DNA replication
B/C=1-485 P in utero embryonic development
B/C=1-485 P mitochondrial DNA metabolic process
B/C=1-485 P mitochondrial DNA replication
B/C=1-485 P mitochondrion morphogenesis
B/C=1-485 P mitochondrion organization
B/C=1-485 P positive regulation of DNA-directed DNA polymerase activity
B/C=1-485 P respiratory electron transport chain
Sequences
Download file with secondary structure created by Stride  
5c53.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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