General information
PDB ID 5CDP
Title 2.45A STRUCTURE OF ETOPOSIDE WITH S.AUREUS DNA GYRASE AND DNA
PDB header ISOMERASE
Date 2015-07-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.45
Kind dna
Organism STAPHYLOCOCCUS AUREUS (STRAIN N315), SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5cdp.pdb ABCD EGFH 0
Biounits:
5cdp.pdb1.pdb ABCD EGFH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_topoisoIV Family Q99XG5_33-474 1.1e-156 1 No_clan A 33 474 EHG  H-Bb S-Bb S-Mj S-Mn L-Bb L-Mn 
DNA_gyraseB_C Family P66937_580-634 9.2e-28 1 No_clan B 544 634 H  H-Bb 
Toprim Family P66937_430-542 6.4e-18 1 CL0413 B 430 542 EGH  H-Bb S-Bb L-Bb L-Mn 
DNA_topoisoIV Family Q99XG5_33-474 1e-156 1 No_clan C 33 474 FGE  H-Bb H-Mj S-Bb S-Mj S-Mn L-Bb L-Mn 
DNA_gyraseB_C Family P66937_580-634 9.1e-28 1 No_clan D 544 634 G  H-Bb 
Toprim Family P66937_430-542 6.3e-18 1 CL0413 D 430 542 FGH  H-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/C=9-491 C chromosome
A/C=9-491 C cytoplasm
A/C=9-491 F ATP binding
A/C=9-491 F DNA binding
A/C=9-491 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A/C=9-491 P DNA topological change
A/C=9-491 P DNA-dependent DNA replication
A/C=9-491 P response to antibiotic
B/D=417-543, B/D=580-640 C chromosome
B/D=417-543, B/D=580-640 C cytoplasm
B/D=417-543, B/D=580-640 F ATP binding
B/D=417-543, B/D=580-640 F DNA binding
B/D=417-543, B/D=580-640 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B/D=417-543, B/D=580-640 F metal ion binding
B/D=417-543, B/D=580-640 P DNA topological change
B/D=417-543, B/D=580-640 P DNA-dependent DNA replication
Sequences
Download file with secondary structure created by Stride  
5cdp.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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