General information
PDB ID 5CIZ
Title E. COLI RNA POLYMERASE ALPHA SUBUNIT CTD IN COMPLEX WITH CAP AND DNA: A(5)-TRACT BINDING SITE FOR ALPHA CTD
PDB header GENE REGULATION/DNA
Date 2015-07-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 5.01
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12)
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ciz.pdb AB DE 0
Biounits:
5ciz.pdb1.pdb AB DE 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
cNMP_binding Domain P0ACJ8_21-110 3.5e-24 1 CL0029 A 20 109   
HTH_Crp_2 Domain P0ACJ8_142-206 2.6e-13 1 CL0123 A 141 206 DE  H-Bb H-Mj L-Bb L-Mj 
RNA_pol_A_CTD Domain P0A7Z4_250-309 1e-24 1 CL0198 B 250 309 DE  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=2-210 C cytosol
A=2-210 C protein-DNA complex
A=2-210 F AT DNA binding
A=2-210 F cAMP binding
A=2-210 F DNA binding, bending
A=2-210 F DNA-binding transcription factor activity
A=2-210 F identical protein binding
A=2-210 F sequence-specific DNA binding
A=2-210 P carbon catabolite repression of transcription
A=2-210 P negative regulation of transcription, DNA-templated
A=2-210 P positive regulation of transcription, DNA-templated
A=2-210 P transcription, DNA-templated
B=246-329 C cytoplasm
B=246-329 C cytosol
B=246-329 C membrane
B=246-329 F DNA binding
B=246-329 F DNA-directed 5'-3' RNA polymerase activity
B=246-329 F protein dimerization activity
B=246-329 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
5ciz.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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