General information
PDB ID 5D0B
Title CRYSTAL STRUCTURE OF EPOXYQUEUOSINE REDUCTASE WITH A TRNA-TYR EPOXYQUEUOSINE-MODIFIED TRNA STEM LOOP
PDB header OXIDOREDUCTASE/RNA
Date 2015-08-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.65
Kind rna
Organism BACILLUS SUBTILIS (STRAIN 168), ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5d0b.pdb AB F 0
Biounits:
5d0b.pdb1.pdb A F 1
5d0b.pdb2.pdb B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Fer4_16 Domain P97030_186-249 6e-17 1 CL0344 A 187 250 F   
Fer4_16 Domain P97030_186-249 6e-17 1 CL0344 B 187 250   
DUF1730 Family P97030_57-135 3.8e-19 1 No_clan A 57 135   
DUF1730 Family P97030_57-135 1.8e-18 1 No_clan B 57 135   
HEAT_2 Repeat P97030_295-372 1.8e-12 1 CL0020 A 296 373 F   
HEAT_2 Repeat P97030_295-372 1.8e-12 1 CL0020 B 296 373   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-386 C cytoplasm
A/B=1-386 F 4 iron, 4 sulfur cluster binding
A/B=1-386 F epoxyqueuosine reductase activity
A/B=1-386 F metal ion binding
A/B=1-386 P queuosine biosynthetic process
A/B=1-386 P tRNA processing
Sequences
Download file with secondary structure created by Stride  
5d0b.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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F (rna): 
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5d0b.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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