General information
PDB ID 5EYB
Title X-RAY STRUCTURE OF REB1-TER COMPLEX
PDB header DNA BINDING PROTEIN/DNA
Date 2015-11-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism SCHIZOSACCHAROMYCES POMBE, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5eyb.pdb AB CDEF 0
Biounits:
5eyb.pdb1.pdb A CD 1
5eyb.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Myb_DNA-binding Domain Q9P6H9_365-418 8.8e-14 1 CL0123 A 365 418 CD  H-Bb H-Mj L-Bb 
Myb_DNA-binding Domain Q9P6H9_313-357 3e-11 1 CL0123 A 313 357 CD  H-Bb H-Mj 
Myb_DNA-bind_6 Domain Q9P6H9_308-369 6.1e-13 1 CL0123 B 316 377 EF  H-Bb H-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=146-504 C nuclear rDNA heterochromatin
A/B=146-504 C nucleoplasm
A/B=146-504 C rDNA heterochromatin
A/B=146-504 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B=146-504 F rDNA spacer replication fork barrier binding
A/B=146-504 F rDNA spacer replication fork barrier binding, bending
A/B=146-504 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=146-504 F sequence-specific DNA binding
A/B=146-504 F transcription termination site sequence-specific DNA binding
A/B=146-504 P cis-acting DNA replication termination
A/B=146-504 P positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation
A/B=146-504 P replication fork arrest
A/B=146-504 P replication fork arrest at rDNA repeats
A/B=146-504 P replication fork arrest involved in DNA replication termination
A/B=146-504 P termination of RNA polymerase I transcription
Sequences
Download file with secondary structure created by Stride  
5eyb.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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5eyb.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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