General information
PDB ID 5FKW
Title CRYO-EM STRUCTURE OF THE E. COLI REPLICATIVE DNA POLYMERASE COMPLEX BOUND TO DNA (DNA POLYMERASE III ALPHA, BETA, EPSILON)
PDB header TRANSFERASE
Date 2015-10-20
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.3
Kind dna
Organism ESCHERICHIA COLI K-12, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5fkw.pdb ABCD PT 0
Biounits:
5fkw.pdb1.pdb ABCD PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol3_alpha Domain P10443_290-558 5.1e-106 1 CL0260 A 290 558 PT  H-Bb S-Bb L-Bb 
DNA_pol3_finger Domain P10443_561-735 4.1e-66 1 No_clan A 561 735   
HHH_6 Domain P10443_808-898 2.2e-25 1 CL0198 A 808 898 PT  L-Bb 
DNA_pol3_beta_3 Domain P0A988_245-365 8.5e-44 1 CL0060 B 245 365   
DNA_pol3_beta_2 Domain P0A988_129-243 7.9e-41 1 CL0060 B 129 243   
DNA_pol3_beta Domain P0A988_1-120 9.3e-41 1 CL0060 B 1 120   
DNA_pol3_beta_3 Domain P0A988_245-365 8.5e-44 1 CL0060 C 245 365   
DNA_pol3_beta_2 Domain P0A988_129-243 7.9e-41 1 CL0060 C 129 243 T  H-Bb 
DNA_pol3_beta Domain P0A988_1-120 9.3e-41 1 CL0060 C 1 120   
PHP Family P10443_8-173 6.9e-36 1 CL0034 A 8 173   
RNase_T Family P03007_9-175 1.5e-42 1 CL0219 D 9 175   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-1160 C cytoplasm
A=1-1160 C cytosol
A=1-1160 C DNA polymerase III, core complex
A=1-1160 F DNA binding
A=1-1160 F DNA-directed DNA polymerase activity
A=1-1160 P DNA replication
A=1-1160 P nucleic acid phosphodiester bond hydrolysis
B/C=1-366 C cytosol
B/C=1-366 C DNA polymerase III complex
B/C=1-366 F 3'-5' exonuclease activity
B/C=1-366 F DNA binding
B/C=1-366 F DNA-directed DNA polymerase activity
B/C=1-366 F identical protein binding
B/C=1-366 P cellular response to DNA damage stimulus
B/C=1-366 P DNA strand elongation involved in DNA replication
D=1-243 C cytosol
D=1-243 C DNA polymerase III, core complex
D=1-243 F 3'-5' exonuclease activity
D=1-243 F DNA binding
D=1-243 F DNA-directed DNA polymerase activity
D=1-243 F exonuclease activity
D=1-243 F metal ion binding
D=1-243 P DNA replication proofreading
Sequences
Download file with secondary structure created by Stride  
5fkw.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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