General information
PDB ID 5HNK
Title CRYSTAL STRUCTURE OF T5FEN IN COMPLEX INTACT SUBSTRATE AND METAL IONS.
PDB header HYDROLASE
Date 2016-01-18
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.22
Kind dna
Organism SYNTHETIC CONSTRUCT, ESCHERICHIA PHAGE T5
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5hnk.pdb AB XY 0
Biounits:
5hnk.pdb1.pdb B XY 1
5hnk.pdb2.pdb A XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
5_3_exonuc_N Domain P06229_21-189 2.7e-13 1 CL0280 A 21 189 X   
5_3_exonuc Domain P06229_188-274 4.7e-12 1 CL0464 A 188 275 Y  H-Bb L-Bb 
5_3_exonuc_N Domain P06229_21-189 2.7e-13 1 CL0280 B 21 189 YX  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mj 
5_3_exonuc Domain P06229_188-274 4.7e-12 1 CL0464 B 188 275 XY  H-Bb H-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=20-291 C viral replication complex
A/B=20-291 F 5'-3' exodeoxyribonuclease activity
A/B=20-291 F 5'-3' exonuclease activity
A/B=20-291 F 5'-flap endonuclease activity
A/B=20-291 F DNA binding
A/B=20-291 F double-stranded DNA endodeoxyribonuclease activity
A/B=20-291 F exodeoxyribonuclease activity
A/B=20-291 F metal ion binding
A/B=20-291 P DNA replication, Okazaki fragment processing
A/B=20-291 P late viral transcription
A/B=20-291 P viral DNA genome replication
Sequences
Download file with secondary structure created by Stride  
5hnk.pdb1.pdb:   [ download sequences in FASTA format ]
X (dna): 
Click "SHOW" for view sequence
Y (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
5hnk.pdb2.pdb:   [ download sequences in FASTA format ]
X (dna): 
Click "SHOW" for view sequence
Y (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text