General information
PDB ID 5HRD
Title THE CRYSTAL STRUCTURE OF ASFVPOLX:DNA2 BINARY COMPLEX
PDB header TRANSFERASE/DNA
Date 2016-01-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.8
Kind dna
Organism AFRICAN SWINE FEVER VIRUS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5hrd.pdb ABCD EFGH 0
Biounits:
5hrd.pdb1.pdb AB EF 1
5hrd.pdb2.pdb CD GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_thumb Family P42494_112-174 4.5e-12 1 No_clan A 112 174 FE  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mn 
NTP_transf_2 Family P42494_14-138 0.0007 0 CL0260 A 13 137 EF  H-Bb H-Mj H-Mn S-Bb S-Mn L-Bb 
DNA_pol_B_thumb Family P42494_112-174 4.5e-12 1 No_clan B 112 174 EF  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mn 
NTP_transf_2 Family P42494_14-138 0.0007 0 CL0260 B 13 137 EF  H-Bb H-Mj H-Mn S-Bb L-Bb 
DNA_pol_B_thumb Family P42494_112-174 4.5e-12 1 No_clan C 112 174 HG  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mn 
NTP_transf_2 Family P42494_14-138 0.00071 0 CL0260 C 13 137 GH  H-Bb H-Mj H-Mn S-Bb S-Mn L-Bb 
DNA_pol_B_thumb Family P42494_112-174 4.5e-12 1 No_clan D 112 174 GH  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mn 
NTP_transf_2 Family P42494_14-138 0.00071 0 CL0260 D 13 137 GH  H-Bb H-Mj H-Mn S-Bb S-Mn L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-174 F DNA binding
A/B/C/D=1-174 F DNA-directed DNA polymerase activity
A/B/C/D=1-174 F metal ion binding
A/B/C/D=1-174 P DNA repair
Sequences
Download file with secondary structure created by Stride  
5hrd.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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5hrd.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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C (protein): 
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D (protein): 
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