General information
PDB ID 5I42
Title STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A DNA APTAMER, AZTTP, AND CA(2+) ION
PDB header TRANSFERASE/DNA
Date 2016-02-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind dna
Organism SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5i42.pdb ABCD EF 0
Biounits:
5i42.pdb1.pdb AB E 1
5i42.pdb2.pdb CD F 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RVT_connect Domain P03366_917-1018 2.5e-59 1 No_clan A 318 419 E  S-Bb L-Bb 
RVT_1 Domain P03366_662-833 1.1e-34 1 CL0027 A 63 234 E   
RNase_H Domain P03366_1035-1153 2.4e-28 1 CL0219 A 436 554 E  H-Bb L-Bb 
RVT_thumb Domain P03366_840-903 2.2e-21 1 No_clan A 241 304 E  H-Bb 
RVT_connect Domain P03366_917-1018 1.5e-59 1 No_clan B 318 419   
RVT_1 Domain P03366_662-833 5.7e-33 1 CL0027 B 63 243   
RVT_thumb Domain P03366_840-903 1.4e-21 1 No_clan B 241 304   
RVT_connect Domain P03366_917-1018 2.5e-59 1 No_clan C 318 419 F  S-Bb L-Bb 
RVT_1 Domain P03366_662-833 1.1e-34 1 CL0027 C 63 234 F   
RNase_H Domain P03366_1035-1153 2.4e-28 1 CL0219 C 436 554 F  H-Bb L-Bb 
RVT_thumb Domain P03366_840-903 2.2e-21 1 No_clan C 241 304 F  L-Bb 
RVT_connect Domain P03366_917-1018 1.5e-59 1 No_clan D 318 419   
RVT_1 Domain P03366_662-833 5.7e-33 1 CL0027 D 63 243   
RVT_thumb Domain P03366_840-903 1.4e-21 1 No_clan D 241 304   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/C=600-1154, B/D=600-1027 C host cell nucleus
A/C=600-1154, B/D=600-1027 C host cell plasma membrane
A/C=600-1154, B/D=600-1027 C host multivesicular body
A/C=600-1154, B/D=600-1027 C viral nucleocapsid
A/C=600-1154, B/D=600-1027 C virion membrane
A/C=600-1154, B/D=600-1027 F aspartic-type endopeptidase activity
A/C=600-1154, B/D=600-1027 F DNA binding
A/C=600-1154, B/D=600-1027 F DNA-directed DNA polymerase activity
A/C=600-1154, B/D=600-1027 F exoribonuclease H activity
A/C=600-1154, B/D=600-1027 F lipid binding
A/C=600-1154, B/D=600-1027 F RNA binding
A/C=600-1154, B/D=600-1027 F RNA-directed DNA polymerase activity
A/C=600-1154, B/D=600-1027 F RNA-DNA hybrid ribonuclease activity
A/C=600-1154, B/D=600-1027 F structural molecule activity
A/C=600-1154, B/D=600-1027 F zinc ion binding
A/C=600-1154, B/D=600-1027 P DNA integration
A/C=600-1154, B/D=600-1027 P DNA recombination
A/C=600-1154, B/D=600-1027 P establishment of integrated proviral latency
A/C=600-1154, B/D=600-1027 P induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process
A/C=600-1154, B/D=600-1027 P suppression by virus of host gene expression
A/C=600-1154, B/D=600-1027 P viral entry into host cell
A/C=600-1154, B/D=600-1027 P viral genome integration into host DNA
A/C=600-1154, B/D=600-1027 P viral penetration into host nucleus
Sequences
Download file with secondary structure created by Stride  
5i42.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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A (protein): 
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B (protein): 
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5i42.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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C (protein): 
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D (protein): 
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