General information
PDB ID 5K5I
Title HOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF5-8 AND DNA COMPLEX STRUCTURE IN SPACE GROUP P65
PDB header TRANSCRIPTION/DNA
Date 2016-05-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.19
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5k5i.pdb A BC 0
Biounits:
5k5i.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain P49711_393-416 2.9e-08 0 CL0361 A 393 418 C  H-Bb H-Mj S-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=378-489 C chromosome, centromeric region
A=378-489 C condensed chromosome
A=378-489 C nucleolus
A=378-489 C nucleoplasm
A=378-489 C nucleus
A=378-489 F chromatin insulator sequence binding
A=378-489 F DNA-binding transcription factor activity
A=378-489 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A=378-489 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=378-489 F sequence-specific DNA binding
A=378-489 F transcription regulatory region sequence-specific DNA binding
A=378-489 F zinc ion binding
A=378-489 P chromosome segregation
A=378-489 P DNA methylation
A=378-489 P maintenance of DNA methylation
A=378-489 P negative regulation of cell population proliferation
A=378-489 P negative regulation of transcription by RNA polymerase II
A=378-489 P negative regulation of transcription, DNA-templated
A=378-489 P nucleosome positioning
A=378-489 P positive regulation of gene expression
A=378-489 P positive regulation of transcription by RNA polymerase II
A=378-489 P positive regulation of transcription, DNA-templated
A=378-489 P protein localization to chromosome, centromeric region
A=378-489 P regulation of centromeric sister chromatid cohesion
A=378-489 P regulation of gene expression by genetic imprinting
A=378-489 P regulation of gene expression, epigenetic
A=378-489 P regulation of histone acetylation
A=378-489 P regulation of histone methylation
A=378-489 P regulation of molecular function, epigenetic
Sequences
Download file with secondary structure created by Stride  
5k5i.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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