General information
PDB ID 5M0R
Title CRYO-EM RECONSTRUCTION OF THE MAEDI-VISNA VIRUS (MVV) STRAND TRANSFER COMPLEX
PDB header HYDROLASE
Date 2016-10-05
Experimental method ELECTRON MICROSCOPY
Resolution (A) 8.2
Kind dna
Organism MAEDI VISNA VIRUS (STRAIN KV1772), VISNA LENTIVIRUS (STRAIN 1514), SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5m0r.pdb ABCDEFGHIJKLMNOP QRUSTV 0
Biounits:
5m0r.pdb1.pdb ABCDEFGHIJKLMNOP QRUSTV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Integrase_Zn Domain P35956_1233-1270 2.1e-12 1 No_clan A 8 45   
rve Domain P35956_1282-1372 8.3e-12 1 CL0219 A 57 147 RTU  H-Mn S-Bb S-Mj L-Bb 
IN_DBD_C Domain P35956_1462-1482 0.00061 0 CL0010 A 230 273 Q   
Integrase_Zn Domain P35956_1233-1270 3.4e-12 1 No_clan B 8 60   
rve Domain P35956_1282-1372 5.3e-12 1 CL0219 B 41 147   
IN_DBD_C Domain P35956_1448-1468 0.00071 0 CL0010 B 230 264   
Integrase_Zn Domain P35956_1233-1270 1.9e-12 1 No_clan C 8 45   
rve Domain P35956_1282-1372 5.2e-12 1 CL0219 C 44 147   
IN_DBD_C Domain P35956_1448-1468 0.00073 0 CL0010 C 230 264   
rve Domain P35956_1282-1372 6.6e-12 1 CL0219 D 60 147   
IN_DBD_C Domain P35956_1404-1424 0.00043 0 CL0010 D 230 273   
Integrase_Zn Domain P35956_1233-1270 3.4e-12 1 No_clan E 8 60 R  H-Bb 
rve Domain P35956_1282-1372 5.4e-12 1 CL0219 E 41 147   
IN_DBD_C Domain P35956_1448-1468 0.00076 0 CL0010 E 230 263   
Integrase_Zn Domain P35956_1233-1270 2e-12 1 No_clan F 8 45   
rve Domain P35956_1282-1372 7.7e-12 1 CL0219 F 57 147   
IN_DBD_C Domain P35956_1448-1468 0.00058 0 CL0010 F 230 273 SU   
Integrase_Zn Domain P35956_1233-1270 1.3e-12 1 No_clan G 8 45   
rve Domain P35956_1282-1372 2.5e-12 1 CL0219 G 45 147   
rve Domain P35956_1282-1372 6.7e-12 1 CL0219 H 60 147   
IN_DBD_C Domain P35956_1404-1424 0.00043 0 CL0010 H 230 273   
Integrase_Zn Domain P35956_1233-1270 2.1e-12 1 No_clan I 8 45   
rve Domain P35956_1282-1372 8.3e-12 1 CL0219 I 57 147 RTV  H-Mj H-Mn S-Bb S-Mn 
IN_DBD_C Domain P35956_1462-1482 0.00061 0 CL0010 I 230 273   
Integrase_Zn Domain P35956_1233-1270 3.4e-12 1 No_clan J 8 60   
rve Domain P35956_1282-1372 5.3e-12 1 CL0219 J 41 147   
IN_DBD_C Domain P35956_1448-1468 0.00071 0 CL0010 J 230 264   
Integrase_Zn Domain P35956_1233-1270 1.9e-12 1 No_clan K 8 45   
rve Domain P35956_1282-1372 5.2e-12 1 CL0219 K 44 147   
IN_DBD_C Domain P35956_1448-1468 0.00073 0 CL0010 K 230 264   
rve Domain P35956_1282-1372 6.6e-12 1 CL0219 L 60 147   
IN_DBD_C Domain P35956_1404-1424 0.00043 0 CL0010 L 230 273 QT   
Integrase_Zn Domain P35956_1233-1270 3.4e-12 1 No_clan M 8 60   
rve Domain P35956_1282-1372 5.4e-12 1 CL0219 M 41 147   
IN_DBD_C Domain P35956_1448-1468 0.00076 0 CL0010 M 230 263   
Integrase_Zn Domain P35956_1233-1270 2e-12 1 No_clan N 8 45   
rve Domain P35956_1282-1372 7.7e-12 1 CL0219 N 57 147   
IN_DBD_C Domain P35956_1448-1468 0.00058 0 CL0010 N 230 273 QV   
Integrase_Zn Domain P35956_1233-1270 1.3e-12 1 No_clan O 8 45   
rve Domain P35956_1282-1372 2.5e-12 1 CL0219 O 45 147   
rve Domain P35956_1282-1372 6.7e-12 1 CL0219 P 60 147   
IN_DBD_C Domain P35956_1404-1424 0.00043 0 CL0010 P 230 273   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 C viral capsid
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F aspartic-type endopeptidase activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F DNA binding
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F DNA-directed DNA polymerase activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F dUTP diphosphatase activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F exoribonuclease H activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F RNA-directed DNA polymerase activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F RNA-DNA hybrid ribonuclease activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F zinc ion binding
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P DNA integration
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P DNA recombination
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P establishment of integrated proviral latency
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P nucleotide metabolic process
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P viral entry into host cell
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P viral genome integration into host DNA
Sequences
Download file with secondary structure created by Stride  
5m0r.pdb1.pdb:   [ download sequences in FASTA format ]
Q (dna): 
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R (dna): 
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S (dna): 
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T (dna): 
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U (dna): 
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V (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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