General information
PDB ID 5M1S
Title CRYO-EM STRUCTURE OF THE E. COLI REPLICATIVE DNA POLYMERASE-CLAMP- EXONUCLASE-THETA COMPLEX BOUND TO DNA IN THE EDITING MODE
PDB header DNA BINDING PROTEIN
Date 2016-10-10
Experimental method ELECTRON MICROSCOPY
Resolution (A) 6.7
Kind dna
Organism ESCHERICHIA COLI K12, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5m1s.pdb ABCDF PT 0
Biounits:
5m1s.pdb1.pdb ABCDF PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol3_alpha Domain P10443_290-558 5.1e-106 1 CL0260 A 290 558 PT  H-Bb H-Mj H-Mn 
DNA_pol3_finger Domain P10443_561-735 4.1e-66 1 No_clan A 561 735   
HHH_6 Domain P10443_808-898 2.2e-25 1 CL0198 A 808 898 P  H-Bb 
DNA_pol3_beta_3 Domain P0A988_245-365 8.5e-44 1 CL0060 B 245 365   
DNA_pol3_beta_2 Domain P0A988_129-243 7.9e-41 1 CL0060 B 129 243   
DNA_pol3_beta Domain P0A988_1-120 9.3e-41 1 CL0060 B 1 120   
DNA_pol3_beta_3 Domain P0A988_245-365 8.5e-44 1 CL0060 C 245 365   
DNA_pol3_beta_2 Domain P0A988_129-243 7.9e-41 1 CL0060 C 129 243 P  L-Bb 
DNA_pol3_beta Domain P0A988_1-120 9.3e-41 1 CL0060 C 1 120   
DNA_pol3_theta Domain P0ABS8_10-65 1.4e-32 1 No_clan F 10 65   
PHP Family P10443_8-173 6.9e-36 1 CL0034 A 8 173   
RNase_T Family P03007_9-175 1.7e-42 1 CL0219 D 9 175 PT  L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-927 C cytoplasm
A=1-927 C cytosol
A=1-927 C DNA polymerase III, core complex
A=1-927 F DNA binding
A=1-927 F DNA-directed DNA polymerase activity
A=1-927 P DNA replication
A=1-927 P nucleic acid phosphodiester bond hydrolysis
B/C=1-366 C cytosol
B/C=1-366 C DNA polymerase III complex
B/C=1-366 F 3'-5' exonuclease activity
B/C=1-366 F DNA binding
B/C=1-366 F DNA-directed DNA polymerase activity
B/C=1-366 F identical protein binding
B/C=1-366 P cellular response to DNA damage stimulus
B/C=1-366 P DNA strand elongation involved in DNA replication
D=1-243 C cytosol
D=1-243 C DNA polymerase III, core complex
D=1-243 F 3'-5' exonuclease activity
D=1-243 F DNA binding
D=1-243 F DNA-directed DNA polymerase activity
D=1-243 F exonuclease activity
D=1-243 F metal ion binding
D=1-243 P DNA replication proofreading
F=10-65 C cytosol
F=10-65 C DNA polymerase III, core complex
F=10-65 F DNA binding
F=10-65 F DNA-directed DNA polymerase activity
F=10-65 P DNA replication
Sequences
Download file with secondary structure created by Stride  
5m1s.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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F (protein): 
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