General information
PDB ID 5M64
Title RNA POLYMERASE I ELONGATION COMPLEX WITH A49 TANDEM WINGED HELIX DOMAIN
PDB header TRANSCRIPTION
Date 2016-10-24
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.6
Kind hybrid
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5m64.pdb ABCDEFGHIJKLMN ST R 0
Biounits:
5m64.pdb1.pdb ABCDEFGHIJKLMN ST R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_5 Domain P10964_989-1611 8.3e-90 1 No_clan A 989 1611 T   
RNA_pol_Rpb1_2 Domain P10964_473-653 1.3e-70 1 No_clan A 473 653   
RNA_pol_Rpb1_3 Domain P10964_656-833 4.7e-38 1 No_clan A 656 833   
RNA_pol_Rpb1_1 Domain P10964_8-471 3.7e-29 1 No_clan A 8 471   
RNA_pol_Rpb1_4 Domain P10964_863-982 1.7e-23 1 No_clan A 863 982   
RNA_pol_Rpb2_6 Domain P22138_700-1065 1.4e-113 1 CL0410 B 700 1065   
RNA_pol_Rpb2_2 Domain P22138_210-403 4.6e-40 1 No_clan B 210 403   
RNA_pol_Rpb2_3 Domain P22138_486-551 5e-28 1 No_clan B 486 551 S   
RNA_pol_Rpa2_4 Domain P22138_593-651 3.2e-23 1 No_clan B 593 651   
RNA_pol_Rpb2_7 Domain P22138_1067-1201 3.1e-15 1 No_clan B 1067 1201   
RNA_pol_A_bac Domain P07703_83-220 4.7e-30 1 No_clan C 83 220   
RNA_pol_L Domain P07703_53-325 3.5e-23 1 CL0509 C 53 325   
RNA_pol_Rpb5_C Domain P20434_142-214 1.4e-30 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 3.3e-29 1 CL0236 E 6 100   
RPA43_OB Domain P46669_121-169 7.8e-16 1 CL0021 G 127 214   
SHS2_Rpb7-N Domain P46669_44-112 2.8e-12 1 CL0319 G 44 112   
RPA43_OB Domain P46669_164-205 5.3e-07 1 CL0021 G 170 250   
RNA_POL_M_15KD Domain P32529_7-42 4.6e-15 1 CL0167 I 7 42   
RNA_pol_N Domain P22139_2-60 1e-28 1 No_clan J 2 60   
RNA_pol_L_2 Domain P28000_60-134 2.9e-34 1 CL0509 K 60 134   
DNA_RNApol_7kD Domain P40422_29-60 8.3e-17 1 CL0167 L 29 60   
RNA_pol_Rpb2_1 Family P22138_40-459 8.6e-50 1 No_clan B 40 459   
RNA_polI_A14 Family P50106_18-96 8.9e-10 1 No_clan D 47 100   
RNA_polI_A14 Family P50106_18-96 2e-09 1 No_clan D 18 81   
RNA_pol_Rpb6 Family P20435_79-132 4.4e-14 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 2.3e-43 1 CL0021 H 7 146   
RNA_pol_I_A49 Family Q01080_33-403 3.2e-74 1 CL0662 M 108 403   
RNA_polI_A34 Family P47006_49-180 4.5e-22 1 CL0662 N 44 177   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-1664 C host cell nucleus
A=1-1664 C nucleolus
A=1-1664 C RNA polymerase I complex
A=1-1664 F DNA binding
A=1-1664 F promoter-specific chromatin binding
A=1-1664 F RNA polymerase I activity
A=1-1664 F zinc ion binding
A=1-1664 P nucleolar large rRNA transcription by RNA polymerase I
A=1-1664 P ribosome biogenesis
A=1-1664 P transcription by RNA polymerase I
B=1-1203 C RNA polymerase I complex
B=1-1203 F DNA binding
B=1-1203 F metal ion binding
B=1-1203 F ribonucleoside binding
B=1-1203 F RNA polymerase I activity
B=1-1203 P nucleolar large rRNA transcription by RNA polymerase I
B=1-1203 P ribosome biogenesis
B=1-1203 P transcription by RNA polymerase I
C=1-335 C nucleoplasm
C=1-335 C RNA polymerase I complex
C=1-335 C RNA polymerase III complex
C=1-335 F DNA binding
C=1-335 F protein dimerization activity
C=1-335 F RNA polymerase I activity
C=1-335 P ribosome biogenesis
C=1-335 P termination of RNA polymerase III transcription
C=1-335 P transcription by RNA polymerase I
C=1-335 P transposon integration
C=1-335 P tRNA transcription by RNA polymerase III
D=1-137 C RNA polymerase I complex
D=1-137 F RNA polymerase I activity
D=1-137 P nucleolar large rRNA transcription by RNA polymerase I
D=1-137 P regulation of cell size
D=1-137 P ribosome biogenesis
D=1-137 P transcription by RNA polymerase I
E=1-215 C host cell nucleus
E=1-215 C nucleoplasm
E=1-215 C RNA polymerase I complex
E=1-215 C RNA polymerase II, core complex
E=1-215 C RNA polymerase III complex
E=1-215 F DNA binding
E=1-215 F RNA polymerase I activity
E=1-215 P ribosome biogenesis
E=1-215 P termination of RNA polymerase III transcription
E=1-215 P transcription by RNA polymerase I
E=1-215 P transcription by RNA polymerase II
E=1-215 P transcription by RNA polymerase III
E=1-215 P transcription, RNA-templated
E=1-215 P tRNA transcription by RNA polymerase III
F=1-155 C cytoplasm
F=1-155 C nucleoplasm
F=1-155 C RNA polymerase I complex
F=1-155 C RNA polymerase II, core complex
F=1-155 C RNA polymerase III complex
F=1-155 F DNA binding
F=1-155 F RNA polymerase I activity
F=1-155 P ribosome biogenesis
F=1-155 P termination of RNA polymerase III transcription
F=1-155 P transcription by RNA polymerase I
F=1-155 P transcription by RNA polymerase II
F=1-155 P transcription by RNA polymerase III
F=1-155 P transcription, RNA-templated
F=1-155 P tRNA transcription by RNA polymerase III
G=1-326 C RNA polymerase I complex
G=1-326 F RNA polymerase I activity
G=1-326 P nucleolar large rRNA transcription by RNA polymerase I
G=1-326 P ribosome biogenesis
G=1-326 P transcription by RNA polymerase I
H=1-146 C nucleoplasm
H=1-146 C RNA polymerase I complex
H=1-146 C RNA polymerase II, core complex
H=1-146 C RNA polymerase III complex
H=1-146 F DNA binding
H=1-146 F RNA polymerase I activity
H=1-146 P ribosome biogenesis
H=1-146 P termination of RNA polymerase III transcription
H=1-146 P transcription by RNA polymerase I
H=1-146 P transcription by RNA polymerase II
H=1-146 P transcription by RNA polymerase III
H=1-146 P transcription, RNA-templated
H=1-146 P tRNA transcription by RNA polymerase III
I=1-125 C RNA polymerase I complex
I=1-125 F nucleic acid binding
I=1-125 F RNA polymerase I activity
I=1-125 F RNA polymerase II-specific DNA-binding transcription factor binding
I=1-125 F zinc ion binding
I=1-125 P mRNA cleavage
I=1-125 P negative regulation of transcription by RNA polymerase II
I=1-125 P nucleolar large rRNA transcription by RNA polymerase I
I=1-125 P ribosome biogenesis
I=1-125 P termination of RNA polymerase I transcription
I=1-125 P transcription by RNA polymerase I
J=1-70 C nucleoplasm
J=1-70 C RNA polymerase I complex
J=1-70 C RNA polymerase II, core complex
J=1-70 C RNA polymerase III complex
J=1-70 F DNA binding
J=1-70 F RNA polymerase I activity
J=1-70 F zinc ion binding
J=1-70 P ribosome biogenesis
J=1-70 P termination of RNA polymerase III transcription
J=1-70 P transcription by RNA polymerase I
J=1-70 P transcription by RNA polymerase II
J=1-70 P transcription by RNA polymerase III
J=1-70 P transcription, RNA-templated
J=1-70 P tRNA transcription by RNA polymerase III
K=1-142 C nucleoplasm
K=1-142 C RNA polymerase I complex
K=1-142 C RNA polymerase III complex
K=1-142 F DNA binding
K=1-142 F protein dimerization activity
K=1-142 F RNA polymerase I activity
K=1-142 P ribosome biogenesis
K=1-142 P termination of RNA polymerase III transcription
K=1-142 P transcription by RNA polymerase I
K=1-142 P tRNA transcription by RNA polymerase III
L=1-70 C cytoplasm
L=1-70 C nucleolus
L=1-70 C nucleoplasm
L=1-70 C nucleus
L=1-70 C RNA polymerase I complex
L=1-70 C RNA polymerase II, core complex
L=1-70 C RNA polymerase III complex
L=1-70 F DNA binding
L=1-70 F RNA polymerase I activity
L=1-70 F zinc ion binding
L=1-70 P ribosome biogenesis
L=1-70 P termination of RNA polymerase III transcription
L=1-70 P transcription by RNA polymerase I
L=1-70 P transcription by RNA polymerase II
L=1-70 P transcription by RNA polymerase III
L=1-70 P transcription, RNA-templated
L=1-70 P tRNA transcription by RNA polymerase III
M=1-415 C host cell nucleus
M=1-415 C nucleolus
M=1-415 C RNA polymerase I complex
M=1-415 F DNA binding
M=1-415 F RNA polymerase I activity
M=1-415 P nucleolar large rRNA transcription by RNA polymerase I
M=1-415 P regulation of cell size
M=1-415 P ribosome biogenesis
M=1-415 P RNA polymerase I preinitiation complex assembly
M=1-415 P transcription by RNA polymerase I
M=1-415 P transcription elongation from RNA polymerase I promoter
N=1-233 C nucleolus
N=1-233 C nucleus
N=1-233 C RNA polymerase I complex
N=1-233 F RNA polymerase I activity
N=1-233 P nucleolar large rRNA transcription by RNA polymerase I
N=1-233 P ribosome biogenesis
N=1-233 P transcription by RNA polymerase I
N=1-233 P transcription elongation from RNA polymerase I promoter
Sequences
Download file with secondary structure created by Stride  
5m64.pdb1.pdb:   [ download sequences in FASTA format ]
S (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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R (rna): 
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