General information
PDB ID 5MLU
Title CRYSTAL STRUCTURE OF THE PFV GAG CBS BOUND TO A MONONUCLEOSOME
PDB header DNA BINDING PROTEIN
Date 2016-12-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism XENOPUS LAEVIS, SIMIAN FOAMY VIRUS, ESCHERICHIA COLI
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5mlu.pdb ABCDEFGHM IJ 0
Biounits:
5mlu.pdb1.pdb ABCDEFGHM IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_37-132 2.5e-45 1 CL0012 A 39 131 IJ   
CENP-T_C Domain P62799_18-99 5.1e-08 1 CL0012 B 25 98 IJ   
Histone Domain P06897_19-91 1.2e-15 1 CL0012 C 16 90 IJ   
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ   
Histone Domain P84233_37-132 2.5e-45 1 CL0012 E 39 131 IJ   
CENP-T_C Domain P62799_26-99 4.2e-08 1 CL0012 F 26 98 IJ   
Histone Domain P06897_19-91 8.9e-16 1 CL0012 G 14 90 IJ   
Histone Domain P02281_33-102 6.9e-22 1 CL0012 H 28 98 IJ   
Histone_H2A_C Family P06897_92-120 2.9e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 3e-17 1 No_clan G 91 118   
Gag_spuma Family P14349_535-551 0.0002 1 CL0148 M 535 550   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=40-136 C nucleoplasm
A/E=40-136 C nucleosome
A/E=40-136 F DNA binding
A/E=40-136 F protein heterodimerization activity
B/F=20-103 C host cell nucleus
B/F=20-103 C nucleosome
B/F=20-103 C nucleus
B/F=20-103 F DNA binding
B/F=20-103 F protein heterodimerization activity
B/F=20-103 P DNA-templated transcription, initiation
C/G=15-119 C nucleosome
C/G=15-119 C nucleus
C/G=15-119 F DNA binding
C/G=15-119 F protein heterodimerization activity
M=535-551 C host cell cytoplasm
M=535-551 C host cell nucleus
M=535-551 C host cytoskeleton
M=535-551 C viral nucleocapsid
M=535-551 F DNA binding
M=535-551 F RNA binding
M=535-551 P microtubule-dependent intracellular transport of viral material towards nucleus
M=535-551 P viral budding via host ESCRT complex
M=535-551 P viral entry into host cell
M=535-551 P viral release from host cell
Sequences
Download file with secondary structure created by Stride  
5mlu.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text