General information
PDB ID 5MS0
Title PSEUDO-ATOMIC MODEL OF THE RNA POLYMERASE LAMBDA-BASED ANTITERMINATION COMPLEX SOLVED BY CRYO-EM
PDB header TRANSCRIPTION/DNA/RNA
Date 2016-12-29
Experimental method ELECTRON MICROSCOPY
Resolution (A) 9.8
Kind hybrid
Organism ESCHERICHIA PHAGE LAMBDA, ESCHERICHIA COLI, ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ms0.pdb NABCDEFLMO IJ RH 0
Biounits:
5ms0.pdb1.pdb NABCDEFLMO IJ RH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 9.3e-24 1 No_clan A 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.3e-22 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 9.3e-24 1 No_clan B 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.3e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 2e-77 1 CL0410 C 717 1101   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 3.2e-28 1 No_clan C 513 581 J   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3e-27 1 No_clan C 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6e-15 1 No_clan C 330 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 1.8e-07 1 No_clan C 151 283   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 7.9e-90 1 No_clan D 14 342 J  L-Mn 
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 6e-78 1 No_clan D 766 1317 HJ   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 4.3e-27 1 No_clan D 386 486 J   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 5.2e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.2e-16 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.3e-07 1 No_clan D 344 401   
Ribosomal_S10 Domain P0A7R5_7-101 5.8e-33 1 No_clan E 7 101   
NusG Domain P0AFG0_7-112 1.9e-28 1 CL0439 F 7 112 I  L-Bb 
NusB Domain P0A780_7-132 8.7e-35 1 CL0633 L 7 132 R   
NusA_N Domain P0AFF6_4-124 6.7e-37 1 No_clan M 4 124   
KH_5 Domain P0AFF6_230-298 1.1e-27 1 CL0007 M 230 298 R   
S1 Domain P0AFF6_131-197 0.00014 1 CL0021 M 131 197   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.4e-58 1 No_clan C 26 500   
KOW Family P0AFG0_130-165 1e-07 1 CL0107 F 130 165   
N36 Family P03045_2-36 3.7e-25 1 No_clan N 2 36 R   
RNA_pol_Rpb6 Family P0A800_8-60 5.8e-17 1 No_clan O 8 60   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-329 C cytoplasm
A/B=1-329 C cytosol
A/B=1-329 C membrane
A/B=1-329 F DNA binding
A/B=1-329 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-329 F protein dimerization activity
A/B=1-329 P transcription, DNA-templated
C=1-1342 C cytoplasm
C=1-1342 C cytosol
C=1-1342 C membrane
C=1-1342 F DNA binding
C=1-1342 F DNA-directed 5'-3' RNA polymerase activity
C=1-1342 F ribonucleoside binding
C=1-1342 P response to antibiotic
C=1-1342 P transcription, DNA-templated
D=1-1407 C cytoplasm
D=1-1407 C cytosol
D=1-1407 C membrane
D=1-1407 F DNA binding
D=1-1407 F DNA-directed 5'-3' RNA polymerase activity
D=1-1407 F magnesium ion binding
D=1-1407 F zinc ion binding
D=1-1407 P response to antibiotic
D=1-1407 P transcription, DNA-templated
E=4-103 C cytosol
E=4-103 C cytosolic small ribosomal subunit
E=4-103 C small ribosomal subunit
E=4-103 F structural constituent of ribosome
E=4-103 F transcription antitermination factor activity, RNA binding
E=4-103 F tRNA binding
E=4-103 P transcription antitermination
E=4-103 P translation
F=1-181 C cytosol
F=1-181 P DNA-templated transcription, elongation
F=1-181 P DNA-templated transcription, termination
F=1-181 P regulation of DNA-templated transcription, elongation
F=1-181 P transcription antitermination
L=1-139 C cytosol
L=1-139 F RNA binding
L=1-139 P DNA-templated transcription, termination
L=1-139 P transcription antitermination
M=1-495 C cytosol
M=1-495 F bacterial-type RNA polymerase core enzyme binding
M=1-495 F DNA-binding transcription factor activity
M=1-495 F nucleotide binding
M=1-495 F protein domain specific binding
M=1-495 F RNA binding
M=1-495 P protein complex oligomerization
M=1-495 P transcription antitermination
M=1-495 P transcription termination from bacterial-type RNA polymerase promoter
N=3-86 F bacterial-type RNA polymerase core enzyme binding
N=3-86 F DNA binding
N=3-86 F RNA stem-loop binding
N=3-86 F transcription antitermination factor activity, RNA binding
N=3-86 P DNA-templated transcription, termination
N=3-86 P transcription antitermination
O=1-91 C cytosol
O=1-91 C RNA polymerase complex
O=1-91 F DNA binding
O=1-91 F DNA-directed 5'-3' RNA polymerase activity
O=1-91 P protein-containing complex assembly
O=1-91 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
5ms0.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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H (rna): 
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R (rna): 
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