General information
PDB ID 5O9G
Title STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
PDB header DNA BINDING PROTEIN
Date 2017-06-19
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.8
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT, SACCHAROMYCES CEREVISIAE S288C
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5o9g.pdb ABCDEFGHW IJ 0
Biounits:
5o9g.pdb1.pdb ABCDEFGHW IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_37-132 7.9e-46 1 CL0012 A 38 131 IJ   
CENP-T_C Domain P62799_18-99 5.2e-08 1 CL0012 B 20 98 IJ   
Histone Domain P06897_19-91 1.2e-15 1 CL0012 C 16 90 IJ   
Histone Domain P02281_33-102 7.2e-22 1 CL0012 D 28 98 IJ   
Histone Domain P84233_37-132 2.5e-45 1 CL0012 E 39 131 IJ   
CENP-T_C Domain P62799_26-99 4.2e-08 1 CL0012 F 26 98 IJ   
Histone Domain P06897_19-91 8.9e-16 1 CL0012 G 14 90 IJ   
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ   
SNF2-rel_dom Domain P32657_379-665 1.8e-61 1 CL0023 W 379 689 IJ   
Cdh1_DBD_1 Domain P32657_1010-1129 2.3e-45 1 CL0123 W 1010 1129 IJ   
Helicase_C Domain P32657_695-809 1.4e-19 1 CL0023 W 695 809 IJ   
Chromo Domain P32657_285-341 7.9e-15 1 CL0049 W 285 341   
Chromo Domain P32657_178-248 8.3e-07 1 CL0049 W 178 248 I   
Myb_DNA-binding Domain P32657_794-823 4.1e-05 0 CL0123 W 1172 1201   
Histone_H2A_C Family P06897_92-120 2.9e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 3e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C nucleoplasm
A/E=1-136 C nucleosome
A/E=1-136 F DNA binding
A/E=1-136 F protein heterodimerization activity
B/F=1-103 C host cell nucleus
B/F=1-103 C nucleosome
B/F=1-103 C nucleus
B/F=1-103 F DNA binding
B/F=1-103 F protein heterodimerization activity
B/F=1-103 P DNA-templated transcription, initiation
C/G=1-130 C nucleosome
C/G=1-130 C nucleus
C/G=1-130 F DNA binding
C/G=1-130 F protein heterodimerization activity
D=5-126, H=5-125 C nucleosome
D=5-126, H=5-125 C nucleus
D=5-126, H=5-125 F DNA binding
D=5-126, H=5-125 F protein heterodimerization activity
W=1-1468 C mitochondrion
W=1-1468 C nuclear chromatin
W=1-1468 C nucleolar chromatin
W=1-1468 C SAGA complex
W=1-1468 C SLIK (SAGA-like) complex
W=1-1468 F ATP binding
W=1-1468 F chromatin DNA binding
W=1-1468 F DNA binding
W=1-1468 F DNA-dependent ATPase activity
W=1-1468 F helicase activity
W=1-1468 F methylated histone binding
W=1-1468 F nucleosome-dependent ATPase activity
W=1-1468 F rDNA binding
W=1-1468 F transcription regulatory region sequence-specific DNA binding
W=1-1468 P ATP-dependent chromatin remodeling
W=1-1468 P histone H2B conserved C-terminal lysine ubiquitination
W=1-1468 P negative regulation of DNA-dependent DNA replication
W=1-1468 P negative regulation of histone exchange
W=1-1468 P negative regulation of histone H3-K14 acetylation
W=1-1468 P negative regulation of histone H3-K9 acetylation
W=1-1468 P nucleosome mobilization
W=1-1468 P nucleosome organization
W=1-1468 P nucleosome positioning
W=1-1468 P regulation of chromatin organization
W=1-1468 P regulation of nucleosome density
W=1-1468 P regulation of transcriptional start site selection at RNA polymerase II promoter
W=1-1468 P sister chromatid cohesion
W=1-1468 P termination of RNA polymerase I transcription
W=1-1468 P termination of RNA polymerase II transcription
W=1-1468 P transcription elongation from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
5o9g.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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W (protein): 
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