General information
PDB ID 5SY7
Title CRYSTAL STRUCTURE OF THE HETERODIMERIC NPAS3-ARNT COMPLEX WITH HRE DNA
PDB header TRANSCRIPTION/DNA
Date 2016-08-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.2
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5sy7.pdb AB CD 0
Biounits:
5sy7.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PAS_11 Domain P53762_361-464 1.8e-20 1 CL0183 A 348 462   
HLH Domain P53762_90-142 1.1e-14 1 No_clan A 90 156 CD  H-Bb H-Mj L-Bb 
PAS Domain P53762_163-270 4.8e-11 1 CL0183 A 163 343   
PAS_3 Domain Q9QZQ0_348-435 3.1e-18 1 CL0183 B 348 431   
PAS Domain Q9QZQ0_155-217 1.6e-10 1 CL0183 B 155 297   
HLH Domain Q9QZQ0_58-107 0.00037 0 No_clan B 59 111 CD  H-Bb H-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=82-464 C cytoplasm
A=82-464 C nuclear body
A=82-464 C nucleoplasm
A=82-464 C nucleus
A=82-464 C RNA polymerase II transcription regulator complex
A=82-464 C transcription regulator complex
A=82-464 F aryl hydrocarbon receptor binding
A=82-464 F cis-regulatory region sequence-specific DNA binding
A=82-464 F DNA-binding transcription factor activity
A=82-464 F nuclear receptor activity
A=82-464 F protein heterodimerization activity
A=82-464 F protein homodimerization activity
A=82-464 F protein-containing complex binding
A=82-464 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=82-464 F sequence-specific DNA binding
A=82-464 F sequence-specific double-stranded DNA binding
A=82-464 F transcription factor binding
A=82-464 P cell differentiation
A=82-464 P embryonic placenta development
A=82-464 P positive regulation of hormone biosynthetic process
A=82-464 P positive regulation of protein sumoylation
A=82-464 P positive regulation of transcription by RNA polymerase II
A=82-464 P positive regulation of transcription, DNA-templated
A=82-464 P positive regulation of vascular endothelial growth factor production
A=82-464 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
A=82-464 P response to hypoxia
A=82-464 P response to toxic substance
B=56-455 C nucleoplasm
B=56-455 C nucleus
B=56-455 F DNA binding
B=56-455 F DNA-binding transcription factor activity, RNA polymerase II-specific
B=56-455 F protein heterodimerization activity
B=56-455 P locomotory behavior
B=56-455 P maternal behavior
B=56-455 P positive regulation of transcription, DNA-templated
B=56-455 P regulation of transcription by RNA polymerase II
B=56-455 P startle response
Sequences
Download file with secondary structure created by Stride  
5sy7.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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