General information
PDB ID 5T01
Title HUMAN C-JUN DNA BINDING DOMAIN HOMODIMER IN COMPLEX WITH METHYLATED DNA
PDB header TRANSCRIPTION REGULATOR/DNA
Date 2016-08-15
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.89
Kind dna
Organism SYNTHETIC CONSTRUCT, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5t01.pdb AB CD 0
Biounits:
5t01.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
bZIP_1 Coiled-coil P05412_256-313 2.4e-18 1 CL0018 A 252 313 CD  H-Bb H-Mj L-Bb 
ZapB Coiled-coil P05412_273-309 0.00057 0 CL0225 A 268 312 CD   
bZIP_1 Coiled-coil P05412_256-313 2.4e-18 1 CL0018 B 252 313 CD  H-Bb H-Mj L-Bb 
ZapB Coiled-coil P05412_273-309 0.00057 0 CL0225 B 268 312 CD   
PspA_IM30 Family P05412_273-311 0.00058 0 CL0235 A 271 313 D   
PspA_IM30 Family P05412_273-311 0.00058 0 CL0235 B 271 313 C   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=254-315 C cytosol
A/B=254-315 C nuclear chromatin
A/B=254-315 C nuclear chromosome
A/B=254-315 C nuclear euchromatin
A/B=254-315 C nucleoplasm
A/B=254-315 C nucleus
A/B=254-315 C transcription factor AP-1 complex
A/B=254-315 C transcription regulator complex
A/B=254-315 C transcription repressor complex
A/B=254-315 F cAMP response element binding
A/B=254-315 F chromatin binding
A/B=254-315 F DNA binding
A/B=254-315 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B=254-315 F DNA-binding transcription factor activity
A/B=254-315 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B=254-315 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B=254-315 F enzyme binding
A/B=254-315 F GTPase activator activity
A/B=254-315 F HMG box domain binding
A/B=254-315 F identical protein binding
A/B=254-315 F protein-containing complex binding
A/B=254-315 F R-SMAD binding
A/B=254-315 F RNA binding
A/B=254-315 F RNA polymerase II activating transcription factor binding
A/B=254-315 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=254-315 F sequence-specific double-stranded DNA binding
A/B=254-315 F transcription coactivator activity
A/B=254-315 F transcription factor binding
A/B=254-315 F transcription regulatory region sequence-specific DNA binding
A/B=254-315 F ubiquitin protein ligase binding
A/B=254-315 F ubiquitin-like protein ligase binding
A/B=254-315 P aging
A/B=254-315 P angiogenesis
A/B=254-315 P axon regeneration
A/B=254-315 P cellular response to cadmium ion
A/B=254-315 P cellular response to calcium ion
A/B=254-315 P cellular response to hormone stimulus
A/B=254-315 P cellular response to potassium ion starvation
A/B=254-315 P cellular response to reactive oxygen species
A/B=254-315 P circadian rhythm
A/B=254-315 P eyelid development in camera-type eye
A/B=254-315 P Fc-epsilon receptor signaling pathway
A/B=254-315 P leading edge cell differentiation
A/B=254-315 P learning
A/B=254-315 P liver development
A/B=254-315 P membrane depolarization
A/B=254-315 P microglial cell activation
A/B=254-315 P monocyte differentiation
A/B=254-315 P negative regulation by host of viral transcription
A/B=254-315 P negative regulation of cell population proliferation
A/B=254-315 P negative regulation of DNA binding
A/B=254-315 P negative regulation of neuron apoptotic process
A/B=254-315 P negative regulation of protein autophosphorylation
A/B=254-315 P negative regulation of transcription by RNA polymerase II
A/B=254-315 P negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
A/B=254-315 P negative regulation of transcription, DNA-templated
A/B=254-315 P outflow tract morphogenesis
A/B=254-315 P positive regulation by host of viral transcription
A/B=254-315 P positive regulation of apoptotic process
A/B=254-315 P positive regulation of cell differentiation
A/B=254-315 P positive regulation of DNA replication
A/B=254-315 P positive regulation of DNA-templated transcription, initiation
A/B=254-315 P positive regulation of endothelial cell proliferation
A/B=254-315 P positive regulation of epithelial cell migration
A/B=254-315 P positive regulation of ERK1 and ERK2 cascade
A/B=254-315 P positive regulation of fibroblast proliferation
A/B=254-315 P positive regulation of monocyte differentiation
A/B=254-315 P positive regulation of neuron apoptotic process
A/B=254-315 P positive regulation of pri-miRNA transcription by RNA polymerase II
A/B=254-315 P positive regulation of transcription by RNA polymerase II
A/B=254-315 P positive regulation of transcription, DNA-templated
A/B=254-315 P positive regulation of vascular associated smooth muscle cell proliferation
A/B=254-315 P Ras protein signal transduction
A/B=254-315 P regulation of cell cycle
A/B=254-315 P regulation of cell population proliferation
A/B=254-315 P regulation of DNA-binding transcription factor activity
A/B=254-315 P release of cytochrome c from mitochondria
A/B=254-315 P response to cAMP
A/B=254-315 P response to cytokine
A/B=254-315 P response to drug
A/B=254-315 P response to hydrogen peroxide
A/B=254-315 P response to lipopolysaccharide
A/B=254-315 P response to mechanical stimulus
A/B=254-315 P response to muscle stretch
A/B=254-315 P response to organic substance
A/B=254-315 P response to radiation
A/B=254-315 P SMAD protein signal transduction
A/B=254-315 P transcription by RNA polymerase II
A/B=254-315 P transforming growth factor beta receptor signaling pathway
Sequences
Download file with secondary structure created by Stride  
5t01.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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