General information
PDB ID 5UK7
Title ESCHERICHIA COLI HFQ BOUND TO DSDNA
PDB header DNA BINDING PROTEIN/DNA
Date 2017-01-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5uk7.pdb ABCDEFGHIJKL NMYZ 0
Biounits:
5uk7.pdb1.pdb ABCGHI NM 1
5uk7.pdb2.pdb DEFJKL YZ 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Hfq Domain P0A6X3_7-69 5.9e-30 1 CL0527 A 7 65   
Hfq Domain P0A6X3_7-69 3.3e-31 1 CL0527 B 7 68   
Hfq Domain P0A6X3_7-69 3.3e-31 1 CL0527 C 7 68   
Hfq Domain P0A6X3_7-69 3.3e-31 1 CL0527 D 7 68   
Hfq Domain P0A6X3_7-69 8.6e-31 1 CL0527 E 7 67 Z   
Hfq Domain P0A6X3_7-69 2.4e-30 1 CL0527 F 7 66   
Hfq Domain P0A6X3_7-69 3.3e-31 1 CL0527 G 7 68   
Hfq Domain P0A6X3_7-69 3e-31 1 CL0527 H 7 68 N  H-Bb 
Hfq Domain P0A6X3_7-69 3e-31 1 CL0527 I 7 68   
Hfq Domain P0A6X3_7-69 2.4e-30 1 CL0527 J 7 66   
Hfq Domain P0A6X3_7-69 1.6e-31 1 CL0527 K 7 69   
Hfq Domain P0A6X3_7-69 8.6e-31 1 CL0527 L 7 67   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F/G/H/I/J/K/L=2-69 C cytosol
A/B/C/D/E/F/G/H/I/J/K/L=2-69 F bent DNA binding
A/B/C/D/E/F/G/H/I/J/K/L=2-69 F RNA binding
A/B/C/D/E/F/G/H/I/J/K/L=2-69 P negative regulation of translation, ncRNA-mediated
A/B/C/D/E/F/G/H/I/J/K/L=2-69 P positive regulation of translation, ncRNA-mediated
A/B/C/D/E/F/G/H/I/J/K/L=2-69 P regulation of RNA stability
A/B/C/D/E/F/G/H/I/J/K/L=2-69 P regulation of transcription, DNA-templated
A/B/C/D/E/F/G/H/I/J/K/L=2-69 P regulation of translation, ncRNA-mediated
Sequences
Download file with secondary structure created by Stride  
5uk7.pdb1.pdb:   [ download sequences in FASTA format ]
M (dna): 
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N (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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5uk7.pdb2.pdb:   [ download sequences in FASTA format ]
D (protein): 
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E (protein): 
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F (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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