General information
PDB ID 5V0L
Title CRYSTAL STRUCTURE OF THE AHR-ARNT HETERODIMER IN COMPLEX WITH THE DRE
PDB header TRANSCRIPTION/DNA
Date 2017-02-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 4
Kind dna
Organism HOMO SAPIENS, MUS MUSCULUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5v0l.pdb AB CD 0
Biounits:
5v0l.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HLH Domain P27540_90-143 4.2e-15 1 No_clan A 90 155 CD  H-Bb H-Mj L-Bb 
PAS Domain P27540_163-269 1.8e-06 1 CL0183 A 163 329   
PAS Domain P30561_111-176 3e-12 1 CL0183 B 85 253   
HLH Domain P30561_37-79 3.3e-06 1 No_clan B 37 79 CD  H-Bb H-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=70-346 C cytoplasm
A=70-346 C nuclear body
A=70-346 C nuclear chromatin
A=70-346 C nucleoplasm
A=70-346 C nucleus
A=70-346 C RNA polymerase II transcription regulator complex
A=70-346 F aryl hydrocarbon receptor binding
A=70-346 F cis-regulatory region sequence-specific DNA binding
A=70-346 F DNA-binding transcription factor activity
A=70-346 F DNA-binding transcription factor activity, RNA polymerase II-specific
A=70-346 F nuclear receptor activity
A=70-346 F protein heterodimerization activity
A=70-346 F protein homodimerization activity
A=70-346 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=70-346 F sequence-specific DNA binding
A=70-346 F sequence-specific double-stranded DNA binding
A=70-346 F transcription factor binding
A=70-346 P cell differentiation
A=70-346 P embryonic placenta development
A=70-346 P positive regulation of endothelial cell proliferation
A=70-346 P positive regulation of erythrocyte differentiation
A=70-346 P positive regulation of glycolytic process
A=70-346 P positive regulation of hormone biosynthetic process
A=70-346 P positive regulation of protein sumoylation
A=70-346 P positive regulation of transcription by RNA polymerase II
A=70-346 P positive regulation of vascular endothelial growth factor production
A=70-346 P positive regulation of vascular endothelial growth factor receptor signaling pathway
A=70-346 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
A=70-346 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
A=70-346 P response to hypoxia
A=70-346 P xenobiotic metabolic process
B=29-267 C aryl hydrocarbon receptor complex
B=29-267 C cytoplasm
B=29-267 C cytosol
B=29-267 C cytosolic aryl hydrocarbon receptor complex
B=29-267 C nuclear aryl hydrocarbon receptor complex
B=29-267 C nucleus
B=29-267 C protein-containing complex
B=29-267 C transcription regulator complex
B=29-267 F aryl hydrocarbon receptor binding
B=29-267 F chaperone binding
B=29-267 F cis-regulatory region sequence-specific DNA binding
B=29-267 F DNA binding
B=29-267 F DNA-binding transcription factor activity
B=29-267 F DNA-binding transcription factor activity, RNA polymerase II-specific
B=29-267 F E-box binding
B=29-267 F Hsp90 protein binding
B=29-267 F identical protein binding
B=29-267 F nuclear receptor activity
B=29-267 F protein heterodimerization activity
B=29-267 F protein homodimerization activity
B=29-267 F sequence-specific DNA binding
B=29-267 F sequence-specific double-stranded DNA binding
B=29-267 F TBP-class protein binding
B=29-267 F TFIID-class transcription factor complex binding
B=29-267 F toxic substance binding
B=29-267 F transcription coactivator binding
B=29-267 F transcription factor binding
B=29-267 F transcription regulatory region sequence-specific DNA binding
B=29-267 P B cell differentiation
B=29-267 P B cell homeostasis
B=29-267 P B-1 B cell homeostasis
B=29-267 P blood circulation
B=29-267 P blood vessel development
B=29-267 P blood vessel morphogenesis
B=29-267 P blood vessel remodeling
B=29-267 P branching involved in blood vessel morphogenesis
B=29-267 P camera-type eye development
B=29-267 P cAMP-mediated signaling
B=29-267 P cardiac left ventricle morphogenesis
B=29-267 P cell cycle
B=29-267 P cell morphogenesis
B=29-267 P cellular response to 2,3,7,8-tetrachlorodibenzodioxine
B=29-267 P cellular response to 3-methylcholanthrene
B=29-267 P cellular response to cAMP
B=29-267 P cellular response to forskolin
B=29-267 P circadian regulation of gene expression
B=29-267 P circumferential growth involved in left ventricle morphogenesis
B=29-267 P common bile duct development
B=29-267 P embryonic hemopoiesis
B=29-267 P gland development
B=29-267 P glomerulus morphogenesis
B=29-267 P immune system process
B=29-267 P kidney morphogenesis
B=29-267 P liver development
B=29-267 P lymphocyte homeostasis
B=29-267 P negative regulation of alkaline phosphatase activity
B=29-267 P negative regulation of calcium ion transmembrane transport
B=29-267 P negative regulation of DNA biosynthetic process
B=29-267 P negative regulation of necrotic cell death
B=29-267 P negative regulation of osteoblast differentiation
B=29-267 P negative regulation of osteoblast proliferation
B=29-267 P negative regulation of systemic arterial blood pressure
B=29-267 P negative regulation of transcription by RNA polymerase II
B=29-267 P negative regulation of transcription, DNA-templated
B=29-267 P negative regulation of vasoconstriction
B=29-267 P ovarian follicle development
B=29-267 P positive regulation of cell size
B=29-267 P positive regulation of growth rate
B=29-267 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
B=29-267 P positive regulation of transcription by RNA polymerase II
B=29-267 P positive regulation of transcription, DNA-templated
B=29-267 P post-embryonic hemopoiesis
B=29-267 P prostate gland development
B=29-267 P regulation of B cell proliferation
B=29-267 P regulation of blood pressure
B=29-267 P regulation of blood vessel diameter
B=29-267 P regulation of gene expression
B=29-267 P regulation of heart growth
B=29-267 P regulation of transcription by RNA polymerase II
B=29-267 P regulation of transcription, DNA-templated
B=29-267 P reproductive structure development
B=29-267 P response to organic cyclic compound
B=29-267 P response to toxic substance
B=29-267 P response to xenobiotic stimulus
B=29-267 P smooth muscle tissue development
B=29-267 P spleen development
B=29-267 P T cell homeostasis
B=29-267 P transcription by RNA polymerase II
B=29-267 P venous blood vessel development
B=29-267 P xenobiotic metabolic process
Sequences
Download file with secondary structure created by Stride  
5v0l.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text