General information
PDB ID 5VVK
Title CAS1-CAS2 BOUND TO FULL-SITE MIMIC
PDB header HYDROLASE/DNA
Date 2017-05-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12), SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5vvk.pdb ABCDEF GHJK 0
Biounits:
5vvk.pdb1.pdb ABCDEF GHJK 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Cas_Cas1 Family Q46896_123-244 3.2e-09 1 No_clan A 123 242 JK  H-Bb H-Mn 
Cas_Cas1 Family Q46896_123-244 0.001 0 No_clan A 17 127 HJ  H-Bb L-Bb L-Mj L-Mn 
Cas_Cas1 Family Q46896_123-244 7.9e-06 1 No_clan B 121 244   
Cas_Cas1 Family Q46896_123-244 0.001 0 No_clan B 17 126   
Cas_Cas1 Family Q46896_123-244 3.2e-09 1 No_clan C 123 242 JK  H-Bb H-Mn 
Cas_Cas1 Family Q46896_123-244 2.2e-09 1 No_clan D 123 244   
Cas_Cas2CT1978 Family P45956_3-88 1.8e-37 1 No_clan E 3 88   
Cas_Cas2CT1978 Family P45956_3-88 1.8e-37 1 No_clan F 3 88   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-305 C cytoplasm
A/B/C/D=1-305 F 5'-flap endonuclease activity
A/B/C/D=1-305 F crossover junction endodeoxyribonuclease activity
A/B/C/D=1-305 F DNA binding
A/B/C/D=1-305 F identical protein binding
A/B/C/D=1-305 F metal ion binding
A/B/C/D=1-305 P cellular response to DNA damage stimulus
A/B/C/D=1-305 P defense response to virus
A/B/C/D=1-305 P DNA repair
A/B/C/D=1-305 P maintenance of CRISPR repeat elements
E/F=1-94 F DNA binding
E/F=1-94 F endonuclease activity
E/F=1-94 P defense response to virus
E/F=1-94 P maintenance of CRISPR repeat elements
Sequences
Download file with secondary structure created by Stride  
5vvk.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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J (dna): 
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K (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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