General information
PDB ID 5VXN
Title STRUCTURE OF TWO RCSB DIMERS BOUND TO TWO PARALLEL DNAS.
PDB header DNA BINDING PROTEIN/DNA
Date 2017-05-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.38
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12)
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5vxn.pdb ABCD EFGH 0
Biounits:
5vxn.pdb1.pdb AB EF 1
5vxn.pdb2.pdb CD GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Response_reg Domain P0DMC7_6-121 1.2e-24 1 CL0304 A 6 121   
GerE Domain P0DMC7_149-205 3e-12 1 CL0123 A 149 205 EF  H-Bb H-Mj L-Bb 
Response_reg Domain P0DMC7_6-121 1e-24 1 CL0304 B 6 121   
GerE Domain P0DMC7_149-205 2.7e-12 1 CL0123 B 139 205 EF  H-Bb H-Mj L-Bb 
Response_reg Domain P0DMC7_6-121 1.2e-24 1 CL0304 C 6 121   
GerE Domain P0DMC7_149-205 3e-12 1 CL0123 C 149 205 GH  H-Bb H-Mj L-Bb 
Response_reg Domain P0DMC7_6-121 1.1e-24 1 CL0304 D 6 121   
GerE Domain P0DMC7_149-205 2.9e-12 1 CL0123 D 149 205 GH  H-Bb H-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-216 C cytosol
A/B/C/D=1-216 F DNA binding
A/B/C/D=1-216 F DNA-binding transcription activator activity
A/B/C/D=1-216 F DNA-binding transcription repressor activity
A/B/C/D=1-216 P negative regulation of transcription, DNA-templated
A/B/C/D=1-216 P phosphorelay signal transduction system
A/B/C/D=1-216 P positive regulation of cell projection organization
A/B/C/D=1-216 P positive regulation of transcription, DNA-templated
A/B/C/D=1-216 P response to antibiotic
A/B/C/D=1-216 P single-species biofilm formation on inanimate substrate
A/B/C/D=1-216 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
5vxn.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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5vxn.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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C (protein): 
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D (protein): 
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