General information
PDB ID 5X07
Title CRYSTAL STRUCTURE OF FOXA2 DNA BINDING DOMAIN BOUND TO A FULL CONSENSUS DNA SITE
PDB header DNA BINDING PROTEIN/DNA
Date 2017-01-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5x07.pdb FCIL DEABGHJK 0
Biounits:
5x07.pdb1.pdb F DE 1
5x07.pdb2.pdb C AB 1
5x07.pdb3.pdb I GH 1
5x07.pdb4.pdb L JK 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Forkhead Domain Q9Y261_158-239 8.7e-39 1 CL0123 C 158 238 AB  H-Bb H-Mj S-Bb L-Bb L-Mn 
Forkhead Domain Q9Y261_158-239 5.7e-39 1 CL0123 F 158 239 DE  H-Bb H-Mj S-Bb L-Bb 
Forkhead Domain Q9Y261_158-239 7.9e-39 1 CL0123 I 158 238 GH  H-Bb H-Mj S-Bb L-Bb 
Forkhead Domain Q9Y261_158-239 5.7e-39 1 CL0123 L 158 239 JK  H-Bb H-Mj S-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
C/F/I/L=157-258 C cell junction
C/F/I/L=157-258 C cytoplasm
C/F/I/L=157-258 C nuclear chromatin
C/F/I/L=157-258 C nucleoplasm
C/F/I/L=157-258 C nucleus
C/F/I/L=157-258 F DNA binding
C/F/I/L=157-258 F DNA-binding transcription factor activity
C/F/I/L=157-258 F DNA-binding transcription factor activity, RNA polymerase II-specific
C/F/I/L=157-258 F protein domain specific binding
C/F/I/L=157-258 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
C/F/I/L=157-258 F sequence-specific double-stranded DNA binding
C/F/I/L=157-258 F transcription factor binding
C/F/I/L=157-258 F transcription regulatory region sequence-specific DNA binding
C/F/I/L=157-258 P adult locomotory behavior
C/F/I/L=157-258 P anatomical structure morphogenesis
C/F/I/L=157-258 P cell differentiation
C/F/I/L=157-258 P cell fate specification
C/F/I/L=157-258 P chromatin organization
C/F/I/L=157-258 P dopaminergic neuron differentiation
C/F/I/L=157-258 P endocrine pancreas development
C/F/I/L=157-258 P negative regulation of detection of glucose
C/F/I/L=157-258 P negative regulation of DNA-binding transcription factor activity
C/F/I/L=157-258 P negative regulation of epithelial to mesenchymal transition
C/F/I/L=157-258 P negative regulation of glucokinase activity
C/F/I/L=157-258 P negative regulation of transcription from RNA polymerase II promoter by glucose
C/F/I/L=157-258 P positive regulation of cell-cell adhesion mediated by cadherin
C/F/I/L=157-258 P positive regulation of embryonic development
C/F/I/L=157-258 P positive regulation of gastrulation
C/F/I/L=157-258 P positive regulation of transcription by RNA polymerase II
C/F/I/L=157-258 P positive regulation of transcription from RNA polymerase II promoter by glucose
C/F/I/L=157-258 P positive regulation of transcription, DNA-templated
C/F/I/L=157-258 P primitive streak formation
C/F/I/L=157-258 P regulation of blood coagulation
C/F/I/L=157-258 P regulation of insulin secretion involved in cellular response to glucose stimulus
C/F/I/L=157-258 P regulation of transcription by RNA polymerase II
C/F/I/L=157-258 P response to interleukin-6
Sequences
Download file with secondary structure created by Stride  
5x07.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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F (protein): 
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5x07.pdb2.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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C (protein): 
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5x07.pdb3.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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I (protein): 
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5x07.pdb4.pdb:   [ download sequences in FASTA format ]
J (dna): 
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K (dna): 
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L (protein): 
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