General information
PDB ID 5YBD
Title X-RAY STRUCTURE OF ETS DOMAIN OF ERGP55 IN COMPLEX WITH E74DNA
PDB header DNA BINDING PROTEIN
Date 2017-09-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.77
Kind dna
Organism HOMO SAPIENS, DROSOPHILA SALTANS, DROSOPHILA ADUNCA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ybd.pdb AX BCYZ 0
Biounits:
5ybd.pdb1.pdb A BC 1
5ybd.pdb2.pdb X YZ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ets Domain P11308_312-391 2.1e-36 1 CL0123 A 312 391 BC  H-Bb H-Mj S-Bb L-Bb 
Ets Domain P11308_312-391 1.9e-36 1 CL0123 X 312 391 YZ  H-Bb H-Mj S-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/X=310-399 C cytoplasm
A/X=310-399 C host cell nucleus
A/X=310-399 C nuclear chromatin
A/X=310-399 C nucleus
A/X=310-399 C ribonucleoprotein complex
A/X=310-399 F chromatin binding
A/X=310-399 F DNA binding
A/X=310-399 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/X=310-399 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/X=310-399 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/X=310-399 F sequence-specific double-stranded DNA binding
A/X=310-399 P cell differentiation
A/X=310-399 P multicellular organism development
A/X=310-399 P positive regulation of transcription by RNA polymerase II
A/X=310-399 P protein phosphorylation
A/X=310-399 P regulation of transcription by RNA polymerase II
A/X=310-399 P signal transduction
Sequences
Download file with secondary structure created by Stride  
5ybd.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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5ybd.pdb2.pdb:   [ download sequences in FASTA format ]
Y (dna): 
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Z (dna): 
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X (protein): 
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