General information
PDB ID 5YEH
Title CRYSTAL STRUCTURE OF CTCF ZFS4-8-ECBS
PDB header DNA BINDING PROTEIN/DNA
Date 2017-09-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.33
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5yeh.pdb AB CDEF 0
Biounits:
5yeh.pdb1.pdb A CD 1
5yeh.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain P49711_371-392 1.5e-09 0 CL0361 A 365 389 C  H-Bb H-Mj L-Bb 
zf-H2C2_2 Domain P49711_393-416 4e-08 0 CL0361 A 393 418 CD  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain P49711_371-392 1.5e-09 0 CL0361 B 365 389 E  H-Bb H-Mj L-Bb 
zf-H2C2_2 Domain P49711_393-416 4e-08 0 CL0361 B 393 418 EF  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=349-490 C chromosome, centromeric region
A/B=349-490 C condensed chromosome
A/B=349-490 C nucleolus
A/B=349-490 C nucleoplasm
A/B=349-490 C nucleus
A/B=349-490 F chromatin insulator sequence binding
A/B=349-490 F DNA-binding transcription factor activity
A/B=349-490 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B=349-490 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=349-490 F sequence-specific DNA binding
A/B=349-490 F transcription regulatory region sequence-specific DNA binding
A/B=349-490 F zinc ion binding
A/B=349-490 P chromosome segregation
A/B=349-490 P DNA methylation
A/B=349-490 P maintenance of DNA methylation
A/B=349-490 P negative regulation of cell population proliferation
A/B=349-490 P negative regulation of transcription by RNA polymerase II
A/B=349-490 P negative regulation of transcription, DNA-templated
A/B=349-490 P nucleosome positioning
A/B=349-490 P positive regulation of gene expression
A/B=349-490 P positive regulation of transcription by RNA polymerase II
A/B=349-490 P positive regulation of transcription, DNA-templated
A/B=349-490 P protein localization to chromosome, centromeric region
A/B=349-490 P regulation of centromeric sister chromatid cohesion
A/B=349-490 P regulation of gene expression by genetic imprinting
A/B=349-490 P regulation of gene expression, epigenetic
A/B=349-490 P regulation of histone acetylation
A/B=349-490 P regulation of histone methylation
A/B=349-490 P regulation of molecular function, epigenetic
Sequences
Download file with secondary structure created by Stride  
5yeh.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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5yeh.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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